Homologs in group_274

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08065 FBDBKF_08065 90.0 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_13895 EHELCC_13895 90.0 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_14340 NLDBIP_14340 90.0 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_08510 LHKJJB_08510 90.0 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_08060 HKOGLL_08060 90.0 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS12515 F4V73_RS12515 32.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS14650 PMI_RS14650 76.1 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_274

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_274

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 2.06e-33 125 32 3 236 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
B1JNC4 3.65e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS7 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 4.64e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
Q66FF1 5.13e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 5.13e-06 50 27 5 155 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q8FQS2 9.69e-06 49 26 3 113 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NRR3 1.36e-05 49 27 2 112 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P0A9E2 3.2e-05 45 33 1 77 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 3.2e-05 45 33 1 77 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 3.2e-05 45 33 1 77 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
Q56143 4.05e-05 45 33 1 77 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MI63 0.000637 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P43461 0.000639 42 42 0 38 4 None Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) Pseudoalteromonas carrageenovora
P40865 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 0.000686 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
B5F0N0 0.000705 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
B4TPR0 0.000772 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
B5FPP6 0.001 43 29 2 81 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12930
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 193914 - 194699 (strand: 1)
Length 786 (nucleotides) / 261 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_274
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02311 AraC-like ligand binding domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MRNIPLKSVDNIARDVIALGTDYLPDTLLEYHSHRRAQFLYPATGLIEVSTAGGEWVIPPSCGVWIPPLIAHETRMLNVSTRSLYIEPAAKPRHCADCEVLSVSPLLRQLLLEAADVPAEYDIQGRDGMLMQLILCELSRARPLPFFVPVPRDEKLGVMCREFMRSPVITSQPGAWAEKLHKSERSFSRFFRTQTGMSFSEWRQQACLLNSLSHILSGKSITEIAYDLGYNSAGAFSIMFKKQMGQSPSHFKVDDVDIRHF

Flanking regions ( +/- flanking 50bp)

ACAGCCGGCAGACCGTCATCTTGAGTCAGAAAGCAGGGAGCACATCACTTATGAGAAATATTCCGTTAAAAAGCGTGGATAATATTGCGCGGGATGTTATTGCGCTGGGAACCGATTATCTGCCGGATACCCTGCTGGAGTACCATTCTCACCGGCGGGCACAGTTTCTCTACCCGGCAACGGGGTTGATTGAAGTCAGTACCGCAGGCGGTGAATGGGTTATTCCGCCTTCCTGTGGCGTGTGGATCCCGCCGCTGATTGCCCATGAAACCCGCATGCTGAATGTCAGCACCCGCAGTCTGTATATTGAACCGGCTGCAAAGCCGCGCCACTGCGCAGATTGCGAAGTCCTGAGTGTCTCTCCGCTGTTACGCCAGTTACTGCTTGAAGCCGCTGATGTGCCCGCTGAATATGATATTCAGGGGCGCGACGGAATGCTGATGCAGTTGATCCTCTGTGAACTGAGCCGCGCCCGTCCCCTGCCGTTTTTTGTGCCGGTCCCGCGGGATGAAAAGCTCGGTGTTATGTGTCGTGAGTTTATGCGCAGCCCGGTGATAACCTCTCAGCCCGGAGCCTGGGCAGAAAAACTGCATAAAAGTGAGCGCTCATTCAGCCGGTTTTTCCGCACACAAACCGGGATGTCTTTCTCAGAATGGCGTCAGCAGGCGTGTCTGCTTAATTCTCTTTCTCATATATTATCGGGAAAATCGATTACAGAGATTGCTTATGACCTGGGCTATAACAGTGCCGGGGCTTTTTCTATTATGTTTAAGAAACAGATGGGTCAGTCACCCTCCCATTTTAAAGTGGATGATGTGGATATCCGGCATTTTTAATTTGTCTTTTCTGACATTTAAACTTATTATGACACTAATATTAAAGTTGA