Homologs in group_34

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13325 FBDBKF_13325 36.1 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08770 EHELCC_08770 36.1 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09095 NLDBIP_09095 36.1 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05170 LHKJJB_05170 36.1 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05745 HKOGLL_05745 36.1 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS03430 F4V73_RS03430 37.0 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS04165 F4V73_RS04165 24.3 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS04870 F4V73_RS04870 22.0 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS12525 F4V73_RS12525 32.2 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS17025 F4V73_RS17025 33.9 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS04495 PMI_RS04495 21.9 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS05115 PMI_RS05115 33.6 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS14600 PMI_RS14600 29.7 Proteus mirabilis HI4320 chbR transcriptional regulator ChbR
PMI_RS18315 PMI_RS18315 23.1 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_34

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_34

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56143 1.84e-19 84 40 0 102 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9E2 2.25e-19 84 39 0 102 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 2.25e-19 84 39 0 102 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 2.25e-19 84 39 0 102 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
Q8ZJU7 2.42e-19 89 30 1 165 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ACI2 2.5e-19 89 30 1 168 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 2.5e-19 89 30 1 168 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 2.5e-19 89 30 1 168 3 rob Right origin-binding protein Escherichia coli O157:H7
P28816 4.9e-19 84 39 0 110 1 tetD Transposon Tn10 TetD protein Escherichia coli
P77601 5.86e-18 84 33 2 156 5 ykgA Putative HTH-type transcriptional regulator YkgA Escherichia coli (strain K12)
Q52620 9.42e-16 75 37 1 106 4 pqrA Probable transcription factor PqrA Proteus vulgaris
P0ACH7 1.85e-15 74 37 0 98 3 marA Multiple antibiotic resistance protein MarA Shigella flexneri
P0ACH5 1.85e-15 74 37 0 98 1 marA Multiple antibiotic resistance protein MarA Escherichia coli (strain K12)
P0ACH6 1.85e-15 74 37 0 98 3 marA Multiple antibiotic resistance protein MarA Escherichia coli O157:H7
P0A2S4 1.95e-15 74 37 0 98 2 marA Multiple antibiotic resistance protein MarA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S5 1.95e-15 74 37 0 98 3 marA Multiple antibiotic resistance protein MarA Salmonella typhi
P0A2S6 1.95e-15 74 37 0 98 3 marA Multiple antibiotic resistance protein MarA Salmonella enteritidis
H9L484 1.07e-12 66 34 0 102 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55922 2.45e-12 65 32 0 101 4 ramA Transcriptional activator RamA Enterobacter cloacae
P43463 3.3e-12 65 37 0 99 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
Q48413 7.33e-12 64 33 0 100 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 7.33e-12 64 33 0 100 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
B1LMU6 3.75e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
Q83PE0 3.82e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 3.82e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q32A70 3.89e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q0TAF8 3.89e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 3.89e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q31U84 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 4.12e-08 57 28 0 98 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 4.12e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
Q1R414 4.16e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 4.16e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 4.16e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 4.16e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 4.16e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
Q8CXW5 4.23e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7N2P7 4.31e-08 57 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
Q3YV71 4.56e-08 56 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
B6I4P8 7.06e-08 56 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
A7ZUB7 7.75e-08 56 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
B2TVP7 8.99e-08 55 28 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
A4WG91 9.51e-08 55 27 0 101 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
O32071 1.1e-07 56 37 0 102 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
A8AL27 1.44e-07 55 28 0 101 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q05587 2.02e-07 55 29 0 96 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5YZ43 2.25e-07 54 27 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 2.25e-07 54 27 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
P19219 3.61e-07 53 29 1 106 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
B5BJG8 5.68e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 5.68e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A9MI64 5.73e-07 53 26 1 111 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5FPP5 5.95e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
Q57HG8 6.4e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
B5F0M9 6.4e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
B4TBY3 6.46e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
P0A2S9 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 6.58e-07 53 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
Q65Q31 8.82e-07 52 32 0 95 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
P26950 9.9e-07 52 36 2 130 4 caf1R F1 operon positive regulatory protein Yersinia pestis
Q65Q30 1.31e-06 52 29 0 98 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A6TGA9 1.48e-06 52 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XZ49 1.87e-06 52 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
B7LVD8 2.39e-06 51 26 0 101 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A9QYR8 7.09e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Angola)
B1JNC5 7.22e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS8 7.22e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis (strain Pestoides F)
B2K1W5 7.22e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FN80 7.22e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q66FF2 7.7e-06 50 26 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype I (strain IP32953)
Q46855 8.37e-06 50 26 0 98 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
P40408 2.87e-05 48 26 1 99 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
Q1CEB5 3.9e-05 47 25 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZJ00 3.9e-05 47 25 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis
Q1C0W1 3.9e-05 47 25 0 96 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Antiqua)
Q9WW32 7.88e-05 47 28 0 99 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
P43461 0.000139 45 29 1 100 4 None Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) Pseudoalteromonas carrageenovora
P0ACH8 0.000246 45 26 0 101 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 0.000246 45 26 0 101 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
C6DJR5 0.000277 45 29 1 98 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
P33234 0.000318 45 29 2 104 2 adiY HTH-type transcriptional regulator AdiY Escherichia coli (strain K12)
Q6DA21 0.000338 45 28 1 98 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q6GKK1 0.000465 45 26 0 101 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q6GD21 0.000469 45 26 0 101 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 0.000469 45 26 0 101 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 0.000531 45 26 0 101 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 0.000531 45 26 0 101 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q5HJR8 0.000662 44 26 0 101 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
P77396 0.000789 43 25 0 106 4 ypdC Uncharacterized HTH-type transcriptional regulator YpdC Escherichia coli (strain K12)
Q936F1 0.001 44 26 0 101 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
T2KMF4 0.001 44 31 1 92 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01705
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 374294 - 375187 (strand: -1)
Length 894 (nucleotides) / 297 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_34
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MNSEIYHYYIIGNLISWIEDNLENELNATIISNKSGYSINYLQRKFKRITGHSISEYVRRRRIFRATLYLCLTGKSIAAISKRLGYRSSSVFIHLFKKNFLTTPLAYRRNKVLDLFNALPRIELMKERPNIEIDRHIENEEITLYGKTYNYTIAVTDFDKPHYPIRKVFRENFFTDTGFSSDNYCTAAWYSPSFDDQHIDVSYFIGTDDIAVMNSCPEHCKYITMQFKNAKSFKCTDHIINPYDIIIDVLFRILKEYNEGWTTAWDFERFGLTDNNRVTLEYIIPVRYINKQVKNEH

Flanking regions ( +/- flanking 50bp)

TCTATTTGAAACCTATATAAGAGATAAAATTATAAGAAAGGGCTGACAAAATGAATTCTGAGATTTATCATTACTATATAATAGGCAATCTTATCAGCTGGATTGAGGATAATCTGGAGAACGAGCTTAACGCTACAATAATTTCAAATAAATCCGGCTACAGCATCAACTATCTGCAACGAAAATTTAAAAGAATAACAGGTCACTCAATTTCAGAATATGTACGCCGCCGTCGTATATTCAGGGCAACACTGTACCTTTGCCTGACAGGAAAAAGTATCGCAGCAATTTCAAAACGTTTAGGATATAGATCATCATCCGTATTTATTCATCTTTTTAAAAAAAACTTCCTCACCACACCTTTAGCATACCGACGAAATAAAGTACTGGATCTTTTTAATGCGCTGCCACGAATTGAATTAATGAAGGAAAGACCAAATATTGAGATTGACAGACATATAGAGAATGAAGAAATAACACTTTACGGAAAAACATATAACTACACAATTGCCGTTACTGACTTTGATAAACCACACTACCCGATCAGAAAAGTTTTCCGTGAAAATTTTTTTACAGACACAGGGTTCAGTTCTGATAACTACTGTACAGCTGCCTGGTATTCCCCCTCATTTGATGACCAGCATATTGATGTATCTTATTTTATTGGCACAGATGATATAGCAGTGATGAATTCCTGCCCGGAACACTGTAAATATATAACTATGCAGTTTAAAAATGCCAAATCATTTAAATGTACAGACCACATCATCAATCCTTATGACATCATAATTGACGTCCTGTTCAGAATATTAAAAGAATATAATGAAGGATGGACAACTGCATGGGATTTTGAAAGGTTCGGGCTGACTGATAATAACAGAGTAACTTTAGAGTATATCATACCGGTTCGGTATATTAATAAGCAGGTTAAAAATGAACATTAATCATAATGTTTTTAAAATAAGTAATCTGATTGCATTTCATTCTATTGTTG