Homologs in group_419

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18920 FBDBKF_18920 100.0 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
FBDBKF_20455 FBDBKF_20455 58.1 Morganella morganii S1 tetD Transposon Tn10 TetD protein
EHELCC_18665 EHELCC_18665 100.0 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_18535 LHKJJB_18535 100.0 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_18270 HKOGLL_18270 100.0 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS13825 F4V73_RS13825 78.5 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS19730 PMI_RS19730 44.7 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_419

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_419

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZJU7 1.28e-55 185 35 4 286 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ACI2 3.2e-55 184 35 4 286 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 3.2e-55 184 35 4 286 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 3.2e-55 184 35 4 286 3 rob Right origin-binding protein Escherichia coli O157:H7
P28816 2.5e-51 169 66 0 119 1 tetD Transposon Tn10 TetD protein Escherichia coli
P43463 1.02e-34 126 52 1 119 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
P0A9E2 1.73e-27 106 50 0 100 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 1.73e-27 106 50 0 100 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 1.73e-27 106 50 0 100 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
Q56143 3.9e-26 102 49 0 99 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77601 4.62e-26 106 33 2 166 5 ykgA Putative HTH-type transcriptional regulator YkgA Escherichia coli (strain K12)
Q52620 2.18e-25 101 46 1 104 4 pqrA Probable transcription factor PqrA Proteus vulgaris
Q48413 1.3e-23 96 47 0 100 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 1.3e-23 96 47 0 100 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
H9L484 2.29e-23 95 43 0 103 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S4 2.17e-22 93 44 0 99 2 marA Multiple antibiotic resistance protein MarA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S5 2.17e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella typhi
P0A2S6 2.17e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella enteritidis
P0ACH7 2.62e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Shigella flexneri
P0ACH5 2.62e-22 93 44 0 99 1 marA Multiple antibiotic resistance protein MarA Escherichia coli (strain K12)
P0ACH6 2.62e-22 93 44 0 99 3 marA Multiple antibiotic resistance protein MarA Escherichia coli O157:H7
P55922 8.84e-20 86 38 0 103 4 ramA Transcriptional activator RamA Enterobacter cloacae
P26950 2.47e-19 89 29 10 289 4 caf1R F1 operon positive regulatory protein Yersinia pestis
O31456 3.71e-13 72 40 0 103 3 ybfP Uncharacterized HTH-type transcriptional regulator YbfP Bacillus subtilis (strain 168)
P96662 1.57e-12 70 34 0 103 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
Q8ZM00 6.97e-10 62 29 1 111 1 STM3175 Probable HTH-type transcriptional regulator STM3175 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q65Q30 7.24e-10 62 28 1 117 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
O32071 4.3e-09 61 32 1 116 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
Q05587 8.89e-07 53 23 1 137 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q936F1 2.41e-06 52 30 0 92 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
P0ACH8 3.57e-06 51 31 1 104 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 3.57e-06 51 31 1 104 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q6GKK1 3.86e-06 52 30 0 92 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q5HJR8 3.86e-06 52 34 2 95 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
Q6GD21 4.11e-06 52 34 2 95 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 4.11e-06 52 34 2 95 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 4.26e-06 52 34 2 95 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 4.26e-06 52 34 2 95 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q65Q31 4.96e-06 50 28 0 97 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
P45008 9.14e-06 50 27 0 83 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B6I4P8 1.03e-05 49 28 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
A7ZUB7 1.47e-05 49 28 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
B4TPQ9 1.72e-05 49 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
C6DJR5 1.85e-05 48 30 0 84 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A4WG91 2.12e-05 48 26 0 105 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
A9MI64 2.16e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5BJG8 2.43e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 2.43e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5FPP5 2.43e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
Q6DA21 2.43e-05 48 29 0 84 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
B4TBY3 2.48e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
B5F0M9 2.52e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
P0A2S9 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 2.57e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
Q57HG8 2.64e-05 48 26 0 100 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
Q83PE0 2.76e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 2.76e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q32A70 2.94e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q31U84 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
Q1R414 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P09377 3e-05 48 27 0 102 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A1AI82 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
A8A709 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7NUA1 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7L9G1 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B7MI37 3e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
B1LMU6 3.05e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
Q0TAF8 3.17e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 3.17e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8CXW5 3.38e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q3YV71 3.41e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
B7LVD8 3.44e-05 48 25 0 105 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B7N2P7 3.47e-05 48 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
P19219 4.59e-05 47 29 0 96 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
B2TVP7 6.16e-05 47 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B5YZ43 6.16e-05 47 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 6.16e-05 47 27 0 102 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
P77396 7.41e-05 47 24 1 121 4 ypdC Uncharacterized HTH-type transcriptional regulator YpdC Escherichia coli (strain K12)
G3XCU2 0.000103 47 27 1 113 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q05335 0.000105 47 27 4 122 4 xylS3 XylDLEGF operon transcriptional activator 3 Pseudomonas putida
B5FPP6 0.000123 46 22 1 123 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
Q47129 0.000126 46 33 2 80 1 feaR Transcriptional activator FeaR Escherichia coli (strain K12)
Q04713 0.000205 46 26 4 122 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
P96660 0.000238 45 24 0 99 4 ydeC Uncharacterized HTH-type transcriptional regulator YdeC Bacillus subtilis (strain 168)
Q66FF1 0.000286 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 0.000286 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TRS7 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 0.000308 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
B1JNC4 0.000314 45 32 0 68 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
B4TPR0 0.000382 45 21 1 123 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
Q05092 0.000487 43 28 1 96 4 xylS2 XylDLEGF operon transcriptional activator 2 Pseudomonas putida
A6TGB0 0.000541 44 29 0 82 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P40408 0.00064 45 23 0 101 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
Q9HTI4 0.000702 44 24 2 132 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 0.000702 44 24 2 132 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
P0ACI3 0.000874 44 29 0 92 1 xylR Xylose operon regulatory protein Escherichia coli (strain K12)
P0ACI4 0.000874 44 29 0 92 3 xylR Xylose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACI5 0.000874 44 29 0 92 3 xylR Xylose operon regulatory protein Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_18640
Feature type CDS
Gene araC
Product AraC-type DNA-binding domain and AraC-containing proteins
Location 24325 - 25263 (strand: -1)
Length 939 (nucleotides) / 312 (amino acids)

Contig

Accession ZDB_542
Length 25512 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_419
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain
PF14526 Integron-associated effector binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19056 AraC family transcriptional regulator, transposon Tn10 TetD protein - -

Protein Sequence

MLKHDNTVTESVDSVPVTDKEQDDNAFYLSVIKDIILWIEHNLDKSLQLDVVAERSGYTKWYFQRIFKRFTDMTLAGYIRRRRLTKAATELRLTTQNIGDIALKYQFDSQQSFARRFKAVFNMTPTEYRRNPNWDLTTLQPPVQLEMPPLPQPDIIMLDDIAVMEKGYHYQSPLDEIGHLHEEIRTTFWRDFIRLVSPELPYCYVRTAYDRTSDQPECIAIGYHIGVDDPAFIVQENELTPAVINRGKYAKFHFDGLFRDYRDFTFNVYLYALPQLGLCRRPGLDIEKYTRTEAISDNPPEHLCVDYYIPVL

Flanking regions ( +/- flanking 50bp)

TATGTAATCGTATCACAGTATTTTTTGGGTGCCAACAAACGGAAATCCTTATGCTTAAACATGATAACACTGTCACGGAATCCGTTGATTCCGTACCGGTCACCGATAAAGAACAGGATGACAATGCCTTTTATCTCAGCGTGATAAAAGACATTATTTTGTGGATTGAGCATAACCTGGATAAGTCACTGCAGCTGGATGTGGTGGCTGAACGTTCCGGCTATACCAAATGGTATTTTCAGCGGATTTTTAAACGCTTTACCGATATGACGCTGGCAGGCTATATCCGCCGCCGCCGTCTGACAAAAGCCGCCACCGAATTACGGCTGACCACACAAAACATCGGTGATATCGCGCTGAAGTATCAGTTTGATTCCCAGCAATCTTTTGCCCGGCGTTTTAAGGCAGTCTTTAATATGACCCCGACAGAATACCGCCGTAATCCCAACTGGGATCTGACAACGCTGCAACCGCCGGTACAACTGGAAATGCCGCCGCTGCCACAGCCGGACATTATTATGCTGGATGATATCGCTGTTATGGAAAAAGGCTATCACTACCAGTCACCGCTGGATGAAATCGGCCATCTGCATGAAGAGATCCGCACGACATTCTGGCGTGATTTTATCCGTCTGGTGTCACCGGAACTTCCGTACTGTTATGTCCGCACCGCCTATGACAGAACATCAGATCAACCGGAATGTATTGCTATCGGCTATCATATCGGGGTGGATGATCCGGCCTTTATTGTACAGGAAAACGAATTAACACCGGCGGTGATCAACCGCGGGAAATATGCAAAATTCCATTTTGACGGCTTATTCCGTGATTACCGGGATTTCACCTTCAATGTGTATTTATACGCGTTACCGCAGCTCGGATTATGCCGCCGTCCGGGACTGGATATTGAAAAATATACCCGAACCGAAGCAATAAGTGATAATCCGCCAGAGCACCTGTGTGTGGATTATTATATTCCGGTACTTTAATCTCTCCCGTATTTTCTCCCTGTTCATGCCGGTTATTTTCTGTTACAGAA