Orthogroup:group_1957


Homologs in group_1957

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14280 FBDBKF_14280 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08000 EHELCC_08000 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_08325 NLDBIP_08325 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05940 LHKJJB_05940 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_04975 HKOGLL_04975 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS02630 F4V73_RS02630 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS08790 PMI_RS08790 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_1957 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1957 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1957

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1957.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 7 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02311 6 AraC-like ligand binding domain
PF07883 1 Cupin domain
PF12833 7 Helix-turn-helix domain

Annotations of the 136 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 4
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
HTH-type transcriptional activator RhaR 40
HTH-type transcriptional activator RhaS 56
HTH-type transcriptional regulator AppY 1
HTH-type transcriptional regulator GadW 3
HTH-type transcriptional regulator GadX 5
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator NimR 1
HTH-type transcriptional regulator RipA 3
HTH-type transcriptional regulator YdeO 4
Probable transcription factor PqrA 1
Regulatory protein PocR 1
Transcriptional regulator HilD 2
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized transcriptional regulatory protein YesN 1

Protein length

Min length 257
Max length 261
Mean length (sd) 258.3 (1.3)
Median length 258.0

Protein length distribution