Homologs in group_2991

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17200 FBDBKF_17200 77.6 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_01690 EHELCC_01690 77.6 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_01770 NLDBIP_01770 77.6 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_00265 LHKJJB_00265 77.6 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_00305 HKOGLL_00305 77.6 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins

Distribution of the homologs in the orthogroup group_2991

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2991

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZJU7 2.72e-40 145 31 6 291 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ACI2 8.35e-40 144 31 7 294 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 8.35e-40 144 31 7 294 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 8.35e-40 144 31 7 294 3 rob Right origin-binding protein Escherichia coli O157:H7
P28816 3.87e-35 127 53 0 108 1 tetD Transposon Tn10 TetD protein Escherichia coli
P43463 7.15e-28 108 46 0 103 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
P0A2S4 4.46e-27 105 42 0 112 2 marA Multiple antibiotic resistance protein MarA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S5 4.46e-27 105 42 0 112 3 marA Multiple antibiotic resistance protein MarA Salmonella typhi
P0A2S6 4.46e-27 105 42 0 112 3 marA Multiple antibiotic resistance protein MarA Salmonella enteritidis
P0ACH7 6.05e-27 105 42 0 112 3 marA Multiple antibiotic resistance protein MarA Shigella flexneri
P0ACH5 6.05e-27 105 42 0 112 1 marA Multiple antibiotic resistance protein MarA Escherichia coli (strain K12)
P0ACH6 6.05e-27 105 42 0 112 3 marA Multiple antibiotic resistance protein MarA Escherichia coli O157:H7
Q52620 4.81e-26 102 47 1 104 4 pqrA Probable transcription factor PqrA Proteus vulgaris
H9L484 1.66e-24 98 45 1 110 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q48413 1.47e-23 96 43 0 108 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 1.47e-23 96 43 0 108 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
P0A9E2 1.5e-23 95 38 0 106 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 1.5e-23 95 38 0 106 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 1.5e-23 95 38 0 106 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
P77601 3.16e-23 99 34 2 153 5 ykgA Putative HTH-type transcriptional regulator YkgA Escherichia coli (strain K12)
P55922 1.42e-22 93 42 0 107 4 ramA Transcriptional activator RamA Enterobacter cloacae
Q56143 1.04e-21 90 37 0 106 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O31456 6.93e-14 73 33 2 146 3 ybfP Uncharacterized HTH-type transcriptional regulator YbfP Bacillus subtilis (strain 168)
P96662 7.18e-14 73 35 0 100 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
P26950 1.75e-12 70 36 2 141 4 caf1R F1 operon positive regulatory protein Yersinia pestis
Q8ZM00 6.88e-09 59 29 2 133 1 STM3175 Probable HTH-type transcriptional regulator STM3175 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O32071 1.7e-08 59 29 0 103 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
P77396 3.52e-08 57 26 1 116 4 ypdC Uncharacterized HTH-type transcriptional regulator YpdC Escherichia coli (strain K12)
P45008 7.73e-08 56 31 0 87 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B5FPP6 1.22e-07 55 29 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
Q65Q31 4.67e-07 53 29 0 95 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A9MI63 5.78e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5F0N0 5.89e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
P40865 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 6.05e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
Q8Z2V5 7.07e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 7.07e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
Q57HG7 7.55e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
B4TPR0 8.43e-07 53 28 0 101 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
Q6GKK1 1.17e-06 53 22 2 146 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q99XB1 1.17e-06 53 22 2 146 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 1.17e-06 53 22 2 146 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q6GD21 1.23e-06 53 22 2 146 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 1.23e-06 53 22 2 146 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q47129 1.26e-06 52 33 3 106 1 feaR Transcriptional activator FeaR Escherichia coli (strain K12)
Q936F1 1.51e-06 53 23 3 157 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
Q5HJR8 2.05e-06 52 22 2 146 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
Q9WW32 2.31e-06 52 28 0 90 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
O87389 3.43e-06 51 28 0 118 4 glxA HTH-type transcriptional regulator GlxA Rhizobium meliloti (strain 1021)
Q05092 4.96e-06 49 32 2 101 4 xylS2 XylDLEGF operon transcriptional activator 2 Pseudomonas putida
Q05587 5e-06 50 28 1 103 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q04713 7.5e-06 50 33 4 113 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
Q05335 9.24e-06 50 33 4 113 4 xylS3 XylDLEGF operon transcriptional activator 3 Pseudomonas putida
P19219 1.41e-05 48 28 0 111 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
Q00753 1.89e-05 48 27 0 100 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q6DA21 1.91e-05 48 24 0 111 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C6DJR5 1.95e-05 48 24 0 111 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
P07642 2.93e-05 48 25 2 108 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
Q32A71 3.86e-05 48 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q83PD9 4.38e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 4.38e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q1R413 4.42e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
P09378 4.42e-05 47 27 0 102 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A1AI83 4.42e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
A8A710 4.42e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 4.42e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q8X7B3 4.63e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
Q31U83 5.3e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 5.3e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 5.3e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 5.3e-05 47 27 0 102 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
P40408 6.73e-05 47 23 0 101 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
Q8FQS2 7.39e-05 47 28 1 90 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q65Q30 8.84e-05 47 30 3 102 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9HTH5 0.000166 46 26 0 102 1 cdhR HTH-type transcriptional regulator CdhR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8NRR3 0.000195 46 30 1 88 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q04710 0.000223 45 31 2 101 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
B1JNC4 0.000226 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS7 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 0.000238 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
B7LVD8 0.000245 45 27 0 99 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q66FF1 0.000249 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 0.000249 45 24 1 113 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q5HKE0 0.000256 45 25 2 114 3 SERP2406 Uncharacterized response regulatory protein SERP2406 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P07859 0.000265 45 31 2 101 4 xylS XylDLEGF operon transcriptional activator Pseudomonas putida
P11765 0.000284 45 28 1 99 3 araC Arabinose operon regulatory protein Citrobacter freundii
P77402 0.000424 45 25 0 101 4 ydiP Uncharacterized HTH-type transcriptional regulator YdiP Escherichia coli (strain K12)
Q46855 0.000503 44 27 0 96 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
P95283 0.000564 44 30 0 79 2 Rv1931c HTH-type transcriptional regulator Rv1931c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P03022 0.000702 44 28 1 99 3 araC Arabinose operon regulatory protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8CQE3 0.000706 43 25 2 113 3 SE_0165 Uncharacterized response regulatory protein SE_0165 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
O31249 0.000749 44 26 0 100 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P0A9E0 0.00075 44 27 0 86 1 araC Arabinose operon regulatory protein Escherichia coli (strain K12)
P0A9E1 0.00075 44 27 0 86 3 araC Arabinose operon regulatory protein Escherichia coli O157:H7
G3XCU2 0.000886 44 28 0 94 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A7ML57 0.001 43 23 0 106 3 rhaR HTH-type transcriptional activator RhaR Cronobacter sakazakii (strain ATCC BAA-894)
A8AL27 0.001 43 26 0 103 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05955
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 1266469 - 1267401 (strand: 1)
Length 933 (nucleotides) / 310 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2991
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05804 AraC family transcriptional regulator, mar-sox-rob regulon activator - -

Protein Sequence

MPQVKKPTGKIMFNERVVDDILGWIESNLESDLSLEAVAQKAGYSKWHFQRIFKQQTGYTLANYVRGRRLSCAAIALRLLPLNLMHLSLKYRFDSQQTFCRAFKQHFGITPSGYRKKHGWHPGGFVLPKRYIDKLHSSLEITMLPQKILTGTSHIYQAASDTWNLNTPVLRQQYWSLFLQRLPVLPDVVYATHGVNKSAGDTFSMCYTTMAETHWLTNTTPQDIVYEPGLVHYLKIIFSGDFSDIDFQDITYDIYNNILSEMSIIRHPDHPDIEKYLLTDKRPEDARTEPKSLIRALHYYIPVILDNPVR

Flanking regions ( +/- flanking 50bp)

ATTTATCTGTTATTGTAAATCAACTGTTATTCAGTACTGAGGCAGATATAATGCCACAGGTAAAAAAACCTACCGGAAAAATTATGTTTAATGAGCGCGTTGTTGATGACATTCTTGGCTGGATAGAAAGTAATCTGGAATCAGATCTTTCATTAGAGGCTGTGGCACAGAAAGCCGGTTATTCAAAATGGCATTTTCAGCGTATATTTAAACAACAAACCGGCTATACCCTGGCAAATTACGTCCGTGGCCGCCGCTTGTCCTGTGCAGCAATAGCCCTGCGGTTGCTGCCGCTTAACCTGATGCACTTGTCATTGAAATACCGGTTTGATTCACAGCAGACATTTTGTCGTGCATTTAAACAGCATTTTGGTATTACGCCATCAGGTTACCGGAAAAAACATGGCTGGCACCCCGGTGGTTTTGTTCTGCCAAAACGTTATATTGATAAACTGCACTCATCACTGGAAATAACGATGCTACCGCAAAAGATATTAACCGGTACATCACATATATATCAGGCAGCATCCGATACCTGGAATCTGAATACTCCCGTATTACGTCAGCAATACTGGTCATTATTTTTGCAGCGGCTTCCTGTTTTACCGGATGTCGTATATGCAACACATGGTGTAAATAAATCAGCCGGTGATACATTTTCGATGTGTTATACCACAATGGCAGAAACTCACTGGCTGACAAATACAACACCACAAGATATTGTTTATGAACCGGGCCTTGTACATTATCTGAAAATCATATTCTCCGGTGATTTTTCAGATATTGATTTTCAGGATATTACCTATGATATTTATAATAATATTCTGTCTGAAATGAGTATTATCCGTCATCCCGACCACCCGGATATTGAAAAATACCTGTTAACAGACAAAAGACCTGAAGACGCACGCACAGAGCCAAAATCCCTGATCCGCGCACTGCACTATTATATTCCGGTGATATTGGATAACCCTGTAAGGTAGTCTTATATATTATCTATCAGCCAGAGAGACACCTTCACGGCTGTCAGGCG