Orthogroup:group_35


Homologs in group_35

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17200 FBDBKF_17200 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
FBDBKF_18175 FBDBKF_18175 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_01690 EHELCC_01690 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_18210 EHELCC_18210 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_01770 NLDBIP_01770 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_18135 NLDBIP_18135 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_00265 LHKJJB_00265 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_18330 LHKJJB_18330 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_00305 HKOGLL_00305 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_18065 HKOGLL_18065 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS01695 F4V73_RS01695 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS05955 F4V73_RS05955 Morganella psychrotolerans - AraC family transcriptional regulator
PMI_RS03950 PMI_RS03950 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of group_35 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_35 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_35

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_35.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 10
2 - 3

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 10
2 helix-turn-helix domain-containing protein 1
3 AraC family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 8 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins
COG4977 5 K Transcription (K) Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05804 13 AraC family transcriptional regulator, mar-sox-rob regulon activator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 13 Helix-turn-helix domain
PF14526 7 Integron-associated effector binding protein

Annotations of the 166 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
F1 operon positive regulatory protein 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 40
HTH-type transcriptional activator RhaS 48
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ChbR 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RipA 2
HTH-type transcriptional regulator Rv1931c 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Putative HTH-type transcriptional regulator YkgA 1
Regulatory protein PocR 1
Regulatory protein SoxS 4
Right origin-binding protein 3
Transcriptional activator FeaR 1
Transcriptional activator NphR 1
Transcriptional activator RamA 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1
Uncharacterized response regulatory protein SERP2406 1
Uncharacterized response regulatory protein SE_0165 1
Uncharacterized transcriptional regulatory protein YesN 1
XylDLEGF operon transcriptional activator 1
XylDLEGF operon transcriptional activator 1 2
XylDLEGF operon transcriptional activator 2 1
XylDLEGF operon transcriptional activator 3 1
Xylose operon regulatory protein 3

Protein length

Min length 298
Max length 310
Mean length (sd) 302.1 (3.5)
Median length 304.0

Protein length distribution