Homologs in group_1515

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09355 FBDBKF_09355 72.5 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_10055 EHELCC_10055 72.5 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_10400 NLDBIP_10400 72.5 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_10955 LHKJJB_10955 72.5 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_14015 HKOGLL_14015 72.5 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS13290 PMI_RS13290 48.6 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_1515

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1515

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69343 8.62e-28 105 37 1 127 1 invF Invasion protein InvF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69342 8.62e-28 105 37 1 127 3 invF Invasion protein InvF Salmonella typhi
P0A2S8 1.77e-19 83 32 1 127 3 mxiE Transcriptional regulator MxiE Shigella sonnei
P0A2S7 1.77e-19 83 32 1 127 4 mxiE Transcriptional regulator MxiE Shigella flexneri

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10610
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 251829 - 252245 (strand: 1)
Length 417 (nucleotides) / 138 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1515
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MMINPEYQVICEMLNAQSSLSGLFKRIRNSEHYWLIKHLVLAADSKNNSVMDISKNYGLSGTHFRRLCQRYIGHQSKYQLRHWRGVASVLDVLVKEHSLTRIASDHGYCSASHFSNEIRQQFGMSPKKIRDLHHAIKK

Flanking regions ( +/- flanking 50bp)

ATAACGATATATTACATCCGGACTATGAGGGTGTTCTGACGGTTCAGGGCATGATGATCAATCCTGAGTATCAGGTTATTTGTGAAATGCTTAATGCGCAGAGCTCATTAAGCGGATTATTTAAACGCATTCGTAATTCAGAACATTACTGGCTGATTAAGCATTTGGTTCTGGCGGCAGACAGCAAAAATAATAGCGTGATGGATATCAGTAAAAACTATGGGTTGTCAGGAACACATTTTCGCCGGTTATGTCAGCGCTATATCGGTCATCAAAGTAAATATCAGTTACGCCATTGGCGGGGCGTTGCATCGGTACTGGATGTTTTAGTCAAAGAACATTCACTGACCCGCATTGCCTCGGATCATGGCTATTGCTCAGCCTCTCATTTTTCCAATGAAATCAGACAACAATTTGGTATGTCACCAAAAAAAATAAGGGATTTACACCATGCAATTAAAAAATAATAGCAGGTGTCCGGCCGTTTTGTGTTTTCTGATTATCTGTTTCTTTTCCG