Homologs in group_419

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18920 FBDBKF_18920 58.1 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_18665 EHELCC_18665 58.1 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_18640 NLDBIP_18640 58.1 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_18535 LHKJJB_18535 58.1 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_18270 HKOGLL_18270 58.1 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS13825 F4V73_RS13825 56.6 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS19730 PMI_RS19730 58.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_419

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_419

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28816 6.36e-98 280 98 0 138 1 tetD Transposon Tn10 TetD protein Escherichia coli
P0ACI2 9.97e-41 140 60 0 104 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 9.97e-41 140 60 0 104 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 9.97e-41 140 60 0 104 3 rob Right origin-binding protein Escherichia coli O157:H7
Q8ZJU7 1.01e-40 140 60 0 104 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43463 7.13e-38 128 50 1 116 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
P0A9E2 1.1e-30 108 50 0 102 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 1.1e-30 108 50 0 102 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 1.1e-30 108 50 0 102 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
Q56143 2.41e-29 105 50 0 102 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77601 3.58e-28 106 41 1 122 5 ykgA Putative HTH-type transcriptional regulator YkgA Escherichia coli (strain K12)
H9L484 6.67e-28 102 47 0 102 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q52620 1.14e-27 102 46 1 103 4 pqrA Probable transcription factor PqrA Proteus vulgaris
Q48413 1.32e-27 101 49 0 100 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 1.32e-27 101 49 0 100 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
P0ACH7 2.44e-27 101 46 0 99 3 marA Multiple antibiotic resistance protein MarA Shigella flexneri
P0ACH5 2.44e-27 101 46 0 99 1 marA Multiple antibiotic resistance protein MarA Escherichia coli (strain K12)
P0ACH6 2.44e-27 101 46 0 99 3 marA Multiple antibiotic resistance protein MarA Escherichia coli O157:H7
P0A2S4 2.78e-27 101 46 0 99 2 marA Multiple antibiotic resistance protein MarA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2S5 2.78e-27 101 46 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella typhi
P0A2S6 2.78e-27 101 46 0 99 3 marA Multiple antibiotic resistance protein MarA Salmonella enteritidis
P55922 6.6e-26 97 45 0 101 4 ramA Transcriptional activator RamA Enterobacter cloacae
O31456 1.97e-16 76 39 0 103 3 ybfP Uncharacterized HTH-type transcriptional regulator YbfP Bacillus subtilis (strain 168)
P96662 2.87e-15 73 37 0 97 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
P26950 8.93e-15 72 39 1 109 4 caf1R F1 operon positive regulatory protein Yersinia pestis
O32071 9.8e-10 58 29 0 102 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
Q8ZM00 3.66e-09 56 31 1 97 1 STM3175 Probable HTH-type transcriptional regulator STM3175 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q6GKK1 5.76e-09 56 28 0 101 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q6GD21 6.1e-09 56 28 0 101 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 6.1e-09 56 28 0 101 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 6.22e-09 56 28 0 101 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 6.22e-09 56 28 0 101 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q5HJR8 6.34e-09 56 28 0 101 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
Q936F1 6.53e-09 56 28 0 101 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
Q05587 7.38e-09 55 30 0 103 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ACH8 1.09e-08 55 32 0 99 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 1.09e-08 55 32 0 99 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
G3XCU2 1.23e-07 52 28 1 116 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9WW32 1.62e-07 52 30 0 82 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
P54722 3.35e-07 51 32 1 101 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
P45008 4.74e-07 50 26 2 130 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q65Q30 6.3e-07 50 28 0 91 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A1JU91 3.26e-06 48 32 0 96 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P28808 4.81e-06 47 32 0 96 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
P0C2V5 5.05e-06 47 32 0 96 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
P26993 5.72e-06 47 33 0 84 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P19219 6.15e-06 47 30 0 93 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
Q00753 6.3e-06 47 29 0 86 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q65Q31 6.32e-06 47 26 1 107 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
P96660 9.52e-06 47 23 1 117 4 ydeC Uncharacterized HTH-type transcriptional regulator YdeC Bacillus subtilis (strain 168)
C6DJR5 1.37e-05 46 39 0 64 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q46855 1.6e-05 46 29 0 103 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
Q6DA21 2.38e-05 45 37 0 64 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
O31449 3.72e-05 45 27 3 122 4 ybfI Uncharacterized HTH-type transcriptional regulator YbfI Bacillus subtilis (strain 168)
P43461 3.99e-05 44 27 1 105 4 None Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) Pseudoalteromonas carrageenovora
Q05092 4.08e-05 44 31 2 95 4 xylS2 XylDLEGF operon transcriptional activator 2 Pseudomonas putida
P07642 4.08e-05 45 27 0 93 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
A4TRS7 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 4.68e-05 45 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
Q05335 5.41e-05 44 32 3 105 4 xylS3 XylDLEGF operon transcriptional activator 3 Pseudomonas putida
B5XZ49 6.24e-05 44 25 0 101 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
Q47129 9.78e-05 43 30 3 99 1 feaR Transcriptional activator FeaR Escherichia coli (strain K12)
A6TGA9 0.000139 43 25 0 101 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P11765 0.000141 43 25 1 99 3 araC Arabinose operon regulatory protein Citrobacter freundii
Q9HTI4 0.000141 43 24 0 101 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 0.000141 43 24 0 101 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
A8AL27 0.000153 43 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q66FF1 0.000206 43 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 0.000206 43 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JNC4 0.00021 43 28 1 114 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q04710 0.000274 42 31 1 95 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
P03022 0.00029 42 25 1 99 3 araC Arabinose operon regulatory protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P07859 0.000293 42 31 1 95 4 xylS XylDLEGF operon transcriptional activator Pseudomonas putida
P0A9E0 0.000371 42 25 0 90 1 araC Arabinose operon regulatory protein Escherichia coli (strain K12)
P0A9E1 0.000371 42 25 0 90 3 araC Arabinose operon regulatory protein Escherichia coli O157:H7
A7ZUB7 0.000389 42 27 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
O87389 0.000423 42 30 1 101 4 glxA HTH-type transcriptional regulator GlxA Rhizobium meliloti (strain 1021)
B4TPQ9 0.000445 42 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B5FPP6 0.000508 42 24 0 100 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
Q04713 0.000531 42 30 3 105 4 xylS1 XylDLEGF operon transcriptional activator 1 Pseudomonas putida
A9MI64 0.00055 42 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q0TAF8 0.000583 42 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7N2P7 0.000583 42 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
B7UNM6 0.000583 42 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B1LMU6 0.000594 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
B5BJG8 0.0006 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 0.0006 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5FPP5 0.0006 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
Q83PE0 0.000612 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 0.000612 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
B4TBY3 0.000617 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
Q31U84 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P0A2S9 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 0.000623 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
P09377 0.000623 41 26 0 98 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 0.000623 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B5F0M9 0.000648 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
Q57HG8 0.000654 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
Q8CXW5 0.000667 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q1R414 0.000673 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 0.000673 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 0.000673 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 0.000673 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 0.000673 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
Q3YV71 0.000686 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
Q32A70 0.000686 41 26 0 98 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
P40408 0.001 41 28 1 99 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
A4WG91 0.001 41 24 0 101 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_20455
Feature type CDS
Gene tetD
Product Transposon Tn10 TetD protein
Location 121 - 537 (strand: -1)
Length 417 (nucleotides) / 138 (amino acids)

Contig

Accession contig_57
Length 3055 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_419
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAMH

Flanking regions ( +/- flanking 50bp)

GTATCATGATGATGTGGTCGTGACAATCTTAAGAACATTTAGGTTATTTTATGTATATTGAACAGCATTCTCGCTATCAAAATAAAGCTAATAACATCCAATTAAGATATGATGATAAGCAGTTTCATACAACGGTTATCAAAGATGTTCTATTATGGATTGAACATAATTTAGATCAGTCTTTACTGCTTGATGATGTGGCGAATAAAGCGGGTTATACCAAGTGGTATTTTCAGCGGCTGTTCAAAAAAGTAACAGGGGTCACACTGGCTAGCTATATTCGTGCTCGTCGTTTGACGAAAGCGGCTGTTGAGTTGAGGTTGACGAAAAAAACTATCCTTGAGATCGCATTAAAATATCAATTTGATTCCCAACAATCTTTTACACGTCGATTTAAGTACATTTTTAAGGTTACACCAAGTTATTATCGGCGTAATAAATTATGGGAATTGGAGGCAATGCACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTT