PF00849


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00849, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 63 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00849
Description RNA pseudouridylate synthase

Occurence in the database

PF00849 is associated with 63 different proteins (see tab "Protein list" and "Profile")
The 63 proteins are classified into 9 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_944 FBDBKF_05140 35508 36440 -1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella morganii S1
1 group_1022 FBDBKF_05725 149530 150291 1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S1
2 group_1068 FBDBKF_06050 35394 36167 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S1
3 group_1096 FBDBKF_06235 79906 80556 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S1
4 group_1938 FBDBKF_14550 5024 5713 1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella morganii S1
5 group_1967 FBDBKF_14755 46374 47333 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S1
6 group_1985 FBDBKF_14885 77501 78196 -1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella morganii S1
7 group_2050 FBDBKF_15360 79980 80957 1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S1
8 group_2183 FBDBKF_16440 11662 12558 1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella morganii S1
9 group_2183 EHELCC_08305 128648 129544 1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella morganii S2
10 group_1068 EHELCC_09095 35966 36739 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S2
11 group_1096 EHELCC_09280 80478 81128 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S2
12 group_2050 EHELCC_10885 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S2
13 group_1022 EHELCC_11865 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S2
14 group_944 EHELCC_12450 145054 145986 1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella morganii S2
15 group_1938 EHELCC_15355 35100 35789 1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella morganii S2
16 group_1967 EHELCC_15560 76450 77409 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S2
17 group_1985 EHELCC_15690 107577 108272 -1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella morganii S2
18 group_2183 NLDBIP_08630 128648 129544 1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella morganii S4
19 group_1068 NLDBIP_09475 35966 36739 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S4
20 group_1096 NLDBIP_09660 80478 81128 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S4
21 group_2050 NLDBIP_11230 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S4
22 group_1022 NLDBIP_12205 31158 31919 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S4
23 group_944 NLDBIP_12790 145009 145941 1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella morganii S4
24 group_1938 NLDBIP_15885 35100 35789 1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella morganii S4
25 group_1967 NLDBIP_16090 76450 77409 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S4
26 group_1985 NLDBIP_16220 107577 108272 -1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella morganii S4
27 group_2183 LHKJJB_05635 127615 128511 -1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella morganii S3
28 group_1096 LHKJJB_08095 136110 136760 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S3
29 group_1068 LHKJJB_08280 180499 181272 1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S3
30 group_2050 LHKJJB_11090 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S3
31 group_1022 LHKJJB_12065 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S3
32 group_944 LHKJJB_12650 145054 145986 1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella morganii S3
33 group_1985 LHKJJB_15620 8414 9109 1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella morganii S3
34 group_1967 LHKJJB_15750 39277 40236 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S3
35 group_1938 LHKJJB_15955 80897 81586 -1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella morganii S3
36 group_2183 HKOGLL_05280 113239 114135 1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella morganii S5
37 group_1096 HKOGLL_07645 136110 136760 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S5
38 group_1068 HKOGLL_07830 180499 181272 1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S5
39 group_2050 HKOGLL_09700 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S5
40 group_1022 HKOGLL_10680 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S5
41 group_944 HKOGLL_11265 145054 145986 1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella morganii S5
42 group_1985 HKOGLL_14740 7626 8321 1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella morganii S5
43 group_1967 HKOGLL_14870 38489 39448 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S5
44 group_1938 HKOGLL_15075 80109 80798 -1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella morganii S5
45 group_2183 F4V73_RS02960 627171 628064 1 rluF 23S rRNA pseudouridine(2604) synthase RluF Morganella psychrotolerans
46 group_944 F4V73_RS05595 1190611 1191543 -1 rluB 23S rRNA pseudouridine(2605) synthase RluB Morganella psychrotolerans
47 group_1938 F4V73_RS07345 1533302 1533943 1 rluE 23S rRNA pseudouridine(2457) synthase RluE Morganella psychrotolerans
48 group_1967 F4V73_RS07550 1575183 1576142 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella psychrotolerans
49 group_1985 F4V73_RS07685 1607075 1607770 -1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Morganella psychrotolerans
50 group_2050 F4V73_RS12095 4016 4993 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella psychrotolerans
51 group_1022 F4V73_RS12565 106807 107505 1 RluA family pseudouridine synthase Morganella psychrotolerans
52 group_1096 F4V73_RS15680 133657 134307 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella psychrotolerans
53 group_1068 F4V73_RS15855 177694 178419 1 truC tRNA pseudouridine(65) synthase TruC Morganella psychrotolerans
54 group_2050 PMI_RS01910 447955 448932 1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Proteus mirabilis HI4320
55 group_1985 PMI_RS04065 910579 911283 1 rsuA 16S rRNA pseudouridine(516) synthase RsuA Proteus mirabilis HI4320
56 group_1967 PMI_RS04185 945239 946192 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Proteus mirabilis HI4320
57 group_1938 PMI_RS04375 982207 982836 -1 rluE 23S rRNA pseudouridine(2457) synthase RluE Proteus mirabilis HI4320
58 group_944 PMI_RS06465 1418468 1419394 -1 rluB 23S rRNA pseudouridine(2605) synthase RluB Proteus mirabilis HI4320
59 group_1068 PMI_RS11325 2493792 2494571 -1 truC tRNA pseudouridine(65) synthase TruC Proteus mirabilis HI4320
60 group_1096 PMI_RS11520 2540379 2541032 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Proteus mirabilis HI4320
61 group_2183 PMI_RS14195 3151719 3152597 -1 rluF 23S rRNA pseudouridine(2604) synthase RluF Proteus mirabilis HI4320
62 group_1022 PMI_RS14760 3274566 3275264 1 RluA family pseudouridine synthase Proteus mirabilis HI4320