Homologs in group_1938

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14550 FBDBKF_14550 75.1 Morganella morganii S1 rluE 23S rRNA pseudouridine(2457) synthase RluE
EHELCC_15355 EHELCC_15355 75.1 Morganella morganii S2 rluE 23S rRNA pseudouridine(2457) synthase RluE
NLDBIP_15885 NLDBIP_15885 75.1 Morganella morganii S4 rluE 23S rRNA pseudouridine(2457) synthase RluE
LHKJJB_15955 LHKJJB_15955 75.1 Morganella morganii S3 rluE 23S rRNA pseudouridine(2457) synthase RluE
HKOGLL_15075 HKOGLL_15075 75.1 Morganella morganii S5 rluE 23S rRNA pseudouridine(2457) synthase RluE
PMI_RS04375 PMI_RS04375 64.1 Proteus mirabilis HI4320 rluE 23S rRNA pseudouridine(2457) synthase RluE

Distribution of the homologs in the orthogroup group_1938

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1938

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZPZ1 2.65e-98 287 69 0 191 3 rluE Ribosomal large subunit pseudouridine synthase E Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75966 1.54e-97 285 72 0 180 1 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli (strain K12)
Q8FIB6 1.91e-97 285 72 0 180 3 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83LF6 6.17e-97 284 71 0 180 3 rluE Ribosomal large subunit pseudouridine synthase E Shigella flexneri
Q8Z7G6 1.83e-96 283 68 0 191 3 rluE Ribosomal large subunit pseudouridine synthase E Salmonella typhi
Q8X724 2.2e-96 282 71 0 180 3 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli O157:H7
Q8ZFQ3 7.59e-94 275 68 0 182 3 rluE Ribosomal large subunit pseudouridine synthase E Yersinia pestis
Q9F855 5.38e-84 252 68 1 177 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8DAS3 2.79e-80 242 57 1 199 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio vulnificus (strain CMCP6)
Q87QY8 8.98e-79 238 61 1 178 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9CKK7 4.14e-77 234 51 2 226 3 rluE Ribosomal large subunit pseudouridine synthase E Pasteurella multocida (strain Pm70)
Q9HX48 7.87e-75 227 64 1 176 3 rluE Ribosomal large subunit pseudouridine synthase E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P44827 6.61e-72 221 62 1 174 3 rluE Ribosomal large subunit pseudouridine synthase E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8PQN3 1.38e-61 193 55 1 176 3 rluE Ribosomal large subunit pseudouridine synthase E Xanthomonas axonopodis pv. citri (strain 306)
Q8PDR2 5.18e-57 181 53 1 175 3 rluE Ribosomal large subunit pseudouridine synthase E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P72581 1.8e-51 170 48 3 196 3 slr0612 Uncharacterized RNA pseudouridine synthase slr0612 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P35159 2.04e-27 107 38 3 176 1 rluB Ribosomal large subunit pseudouridine synthase B Bacillus subtilis (strain 168)
O67444 5.03e-25 101 36 4 190 3 aq_1464 Uncharacterized RNA pseudouridine synthase aq_1464 Aquifex aeolicus (strain VF5)
Q55578 3.48e-23 96 38 4 185 3 slr0361 Uncharacterized RNA pseudouridine synthase slr0361 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1RJR2 3.72e-20 88 32 5 178 3 RBE_0321 Uncharacterized RNA pseudouridine synthase RBE_0321 Rickettsia bellii (strain RML369-C)
P65843 1.25e-19 87 34 5 179 3 BQ2027_MB1738 Uncharacterized RNA pseudouridine synthase Mb1738 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WHQ1 1.25e-19 87 34 5 179 1 Rv1711 Uncharacterized RNA pseudouridine synthase Rv1711 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHQ0 1.25e-19 87 34 5 179 3 MT1751.1 Uncharacterized RNA pseudouridine synthase MT1751.1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9KRK5 1.89e-19 86 33 5 187 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I5J6 7.48e-19 84 35 6 185 3 rsuA Ribosomal small subunit pseudouridine synthase A Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57369 9.38e-19 84 30 4 188 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q92HG4 2.09e-18 83 28 2 176 3 RC0807 Uncharacterized RNA pseudouridine synthase RC0807 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O05668 1.27e-17 81 34 5 178 3 ML1370 Uncharacterized RNA pseudouridine synthase ML1370 Mycobacterium leprae (strain TN)
Q4UL59 1.62e-17 80 29 4 177 3 RF_0863 Uncharacterized RNA pseudouridine synthase RF_0863 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q87QD4 6.38e-17 79 32 5 182 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P0AA46 7.2e-17 79 34 9 193 3 rsuA Ribosomal small subunit pseudouridine synthase A Shigella flexneri
P0AA43 7.2e-17 79 34 9 193 1 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli (strain K12)
P0AA44 7.2e-17 79 34 9 193 3 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA45 7.2e-17 79 34 9 193 3 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli O157:H7
Q9ZD06 8.2e-17 79 29 6 203 3 RP544 Uncharacterized RNA pseudouridine synthase RP544 Rickettsia prowazekii (strain Madrid E)
P42395 8.58e-17 79 30 4 183 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O32068 3.97e-16 77 32 5 178 3 ytzG Uncharacterized RNA pseudouridine synthase YtzG Bacillus subtilis (strain 168)
Q68WJ1 5.59e-16 77 29 7 203 3 RT0532 Uncharacterized RNA pseudouridine synthase RT0532 Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P65840 6.81e-16 76 33 9 193 3 rsuA Ribosomal small subunit pseudouridine synthase A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P65841 6.81e-16 76 33 9 193 3 rsuA Ribosomal small subunit pseudouridine synthase A Salmonella typhi
Q9CMY9 1.08e-15 77 32 4 181 3 rluB Ribosomal large subunit pseudouridine synthase B Pasteurella multocida (strain Pm70)
P45104 1.09e-15 77 34 5 181 1 rluB Ribosomal large subunit pseudouridine synthase B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8D8X2 6.63e-15 73 32 5 181 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio vulnificus (strain CMCP6)
O66829 8.67e-15 73 30 3 156 3 aq_554 Uncharacterized RNA pseudouridine synthase aq_554 Aquifex aeolicus (strain VF5)
Q8ZGM2 1.03e-14 73 35 4 145 3 rsuA Ribosomal small subunit pseudouridine synthase A Yersinia pestis
Q8ZEG0 1.23e-14 74 34 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Yersinia pestis
P59815 1.41e-14 73 34 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Shigella flexneri
Q8X4Q8 1.56e-14 73 34 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli O157:H7
P37765 1.66e-14 73 34 5 177 1 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli (strain K12)
Q8FHV4 1.66e-14 73 34 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z7D5 2.48e-14 73 33 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Salmonella typhi
Q8ZP51 2.68e-14 73 33 5 177 3 rluB Ribosomal large subunit pseudouridine synthase B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45124 2.21e-13 69 32 3 152 1 rsuA Ribosomal small subunit pseudouridine synthase A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CPN4 4.78e-13 68 32 3 155 3 rsuA Ribosomal small subunit pseudouridine synthase A Pasteurella multocida (strain Pm70)
Q89AL1 5.25e-13 68 30 4 181 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P32684 9.22e-13 68 26 4 178 1 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli (strain K12)
Q83IR6 2.33e-12 67 26 4 178 3 rluF Dual-specificity RNA pseudouridine synthase RluF Shigella flexneri
Q8X4L9 2.52e-12 67 26 4 178 3 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli O157:H7
Q8FB47 2.68e-12 67 26 4 178 3 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z1V3 7.17e-12 66 26 4 178 3 rluF Dual-specificity RNA pseudouridine synthase RluF Salmonella typhi
Q8ZKL1 7.61e-12 66 26 4 178 3 rluF Dual-specificity RNA pseudouridine synthase RluF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9HZ55 6.74e-11 64 30 5 183 3 rluB Ribosomal large subunit pseudouridine synthase B Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KSS7 1.67e-10 62 31 6 182 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q87NB7 1.46e-09 60 29 5 182 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8D8C0 2.03e-09 59 29 5 182 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio vulnificus (strain CMCP6)
Q8L960 3.2e-09 59 29 2 133 1 SVR1 Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Arabidopsis thaliana
O51155 1.42e-08 56 25 4 174 3 BB_0129 Uncharacterized RNA pseudouridine synthase BB_0129 Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q8PK58 4.41e-08 56 31 5 176 3 rluB Ribosomal large subunit pseudouridine synthase B Xanthomonas axonopodis pv. citri (strain 306)
Q8P8M6 1.32e-07 54 31 5 174 3 rluB Ribosomal large subunit pseudouridine synthase B Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q9PAP2 2.76e-07 53 31 5 176 3 rluB Ribosomal large subunit pseudouridine synthase B Xylella fastidiosa (strain 9a5c)
Q87BI2 3.2e-07 53 31 5 176 3 rluB Ribosomal large subunit pseudouridine synthase B Xylella fastidiosa (strain Temecula1 / ATCC 700964)
P55986 1.09e-06 51 26 4 161 3 HP_1459 Uncharacterized RNA pseudouridine synthase HP_1459 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZJG0 3.79e-06 49 25 5 186 3 jhp_1352 Uncharacterized RNA pseudouridine synthase jhp_1352 Helicobacter pylori (strain J99 / ATCC 700824)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07345
Feature type CDS
Gene rluE
Product 23S rRNA pseudouridine(2457) synthase RluE
Location 1533302 - 1533943 (strand: 1)
Length 642 (nucleotides) / 213 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1938
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00849 RNA pseudouridylate synthase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1187 Translation, ribosomal structure and biogenesis (J) J Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] - -

Protein Sequence

MAAKTPNTRPTDKKHSHPAAQRLLNKPARKRGPRKMVLFNKPFDVLPQFTDEAGRSTLKDYIPIQDIYAAGRLDRDSEGLLILTNDGVLQSGLTRPDSKAVKVYYVQVEGVPDAAALKKLREGVTLNDGKTLPAGAEITEEPAWLWPRNPPIRERKSIPVTWLKLTLKEGRNRQVRRMTAHIGHPTLRLIRWQIGDYTLDTLKPGDWRSVNDI

Flanking regions ( +/- flanking 50bp)

TAACTGTTTTAAGCTATAATGTAAGTCTCATTTTTTATAAAAAAGATATCATGGCCGCGAAAACACCTAACACCCGACCTACAGACAAAAAACATTCACATCCGGCGGCACAGCGCCTGCTGAATAAACCTGCCCGCAAACGGGGTCCGCGCAAAATGGTTTTGTTTAACAAACCGTTTGATGTGTTACCTCAGTTTACTGATGAAGCCGGGCGCAGCACACTGAAAGATTATATCCCGATTCAGGATATTTATGCCGCAGGACGCCTGGATCGTGACAGCGAAGGGTTACTTATCCTGACCAACGACGGTGTATTACAGTCCGGGCTGACAAGACCGGATAGTAAAGCCGTGAAAGTCTATTATGTCCAGGTGGAAGGTGTGCCGGATGCTGCTGCGCTGAAAAAACTGCGCGAAGGCGTGACGCTTAATGACGGGAAAACCCTCCCGGCAGGTGCTGAAATCACGGAAGAACCCGCCTGGCTGTGGCCGCGTAATCCGCCTATCCGCGAGCGCAAATCAATCCCGGTCACCTGGCTGAAACTGACACTGAAAGAGGGCCGTAACCGCCAGGTCCGCCGGATGACCGCGCATATCGGGCACCCGACACTGCGCCTTATCCGCTGGCAGATTGGCGATTATACCCTTGATACACTCAAACCCGGCGACTGGAGAAGTGTGAATGACATTTAAGCCCCATATTACGGTTGCCTGCATGGTCACCGCAGGCGATAAATTTCTGG