Orthogroup:group_2004


Homologs in group_2004

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15065 FBDBKF_15065 Morganella morganii S1 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
EHELCC_11180 EHELCC_11180 Morganella morganii S2 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
NLDBIP_11525 NLDBIP_11525 Morganella morganii S4 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
LHKJJB_11385 LHKJJB_11385 Morganella morganii S3 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
HKOGLL_09995 HKOGLL_09995 Morganella morganii S5 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
F4V73_RS12385 F4V73_RS12385 Morganella psychrotolerans rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
PMI_RS01630 PMI_RS01630 Proteus mirabilis HI4320 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase

Distribution of group_2004 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2004 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2004

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2004.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rsmE 7

Product

# Product Occurence
1 16S rRNA (uracil(1498)-N(3))-methyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1385 7 J Translation, ribosomal structure and biogenesis (J) 16S rRNA U1498 N3-methylase RsmE

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09761 7 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04452 7 RNA methyltransferase domain
PF20260 7 RNA methyltransferase PUA domain

Annotations of the 19 SwissProt hits

Annotation Number of occurrences
Ribosomal RNA small subunit methyltransferase E 18
Ribosomal RNA small subunit methyltransferase E 2 1

Protein length

Unique protein length 243

Protein length distribution