Homologs in group_2183

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16440 FBDBKF_16440 100.0 Morganella morganii S1 rluF 23S rRNA pseudouridine(2604) synthase RluF
EHELCC_08305 EHELCC_08305 100.0 Morganella morganii S2 rluF 23S rRNA pseudouridine(2604) synthase RluF
LHKJJB_05635 LHKJJB_05635 100.0 Morganella morganii S3 rluF 23S rRNA pseudouridine(2604) synthase RluF
HKOGLL_05280 HKOGLL_05280 100.0 Morganella morganii S5 rluF 23S rRNA pseudouridine(2604) synthase RluF
F4V73_RS02960 F4V73_RS02960 92.6 Morganella psychrotolerans rluF 23S rRNA pseudouridine(2604) synthase RluF
PMI_RS14195 PMI_RS14195 77.7 Proteus mirabilis HI4320 rluF 23S rRNA pseudouridine(2604) synthase RluF

Distribution of the homologs in the orthogroup group_2183

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2183

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZKL1 1.35e-148 421 74 2 298 3 rluF Dual-specificity RNA pseudouridine synthase RluF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z1V3 2.53e-148 420 75 2 298 3 rluF Dual-specificity RNA pseudouridine synthase RluF Salmonella typhi
Q8FB47 3.72e-148 420 75 2 298 3 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X4L9 7.74e-148 419 72 2 308 3 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli O157:H7
Q83IR6 1.27e-147 418 72 2 308 3 rluF Dual-specificity RNA pseudouridine synthase RluF Shigella flexneri
P32684 1.92e-146 416 71 2 308 1 rluF Dual-specificity RNA pseudouridine synthase RluF Escherichia coli (strain K12)
P35159 3.45e-34 127 35 4 234 1 rluB Ribosomal large subunit pseudouridine synthase B Bacillus subtilis (strain 168)
O67444 7.15e-29 114 30 5 240 3 aq_1464 Uncharacterized RNA pseudouridine synthase aq_1464 Aquifex aeolicus (strain VF5)
Q9HZ55 2.28e-27 112 30 8 285 3 rluB Ribosomal large subunit pseudouridine synthase B Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P59815 2.77e-26 108 29 6 270 3 rluB Ribosomal large subunit pseudouridine synthase B Shigella flexneri
Q8X4Q8 2.77e-26 108 29 6 270 3 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli O157:H7
P37765 3.13e-26 107 29 6 270 1 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli (strain K12)
Q8FHV4 4.05e-26 107 29 6 270 3 rluB Ribosomal large subunit pseudouridine synthase B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P65843 5.09e-26 106 32 7 241 3 BQ2027_MB1738 Uncharacterized RNA pseudouridine synthase Mb1738 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WHQ1 5.09e-26 106 32 7 241 1 Rv1711 Uncharacterized RNA pseudouridine synthase Rv1711 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHQ0 5.09e-26 106 32 7 241 3 MT1751.1 Uncharacterized RNA pseudouridine synthase MT1751.1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8Z7D5 3.59e-25 105 28 6 270 3 rluB Ribosomal large subunit pseudouridine synthase B Salmonella typhi
Q8ZP51 4.5e-25 104 28 6 270 3 rluB Ribosomal large subunit pseudouridine synthase B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O32068 2.49e-24 101 30 7 227 3 ytzG Uncharacterized RNA pseudouridine synthase YtzG Bacillus subtilis (strain 168)
Q8ZEG0 2.66e-24 103 29 7 240 3 rluB Ribosomal large subunit pseudouridine synthase B Yersinia pestis
Q1RJR2 8.38e-24 100 30 5 234 3 RBE_0321 Uncharacterized RNA pseudouridine synthase RBE_0321 Rickettsia bellii (strain RML369-C)
P45124 4.68e-23 98 29 5 232 1 rsuA Ribosomal small subunit pseudouridine synthase A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KSS7 1.04e-22 99 27 6 243 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P65840 1.99e-22 96 29 6 234 3 rsuA Ribosomal small subunit pseudouridine synthase A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P65841 1.99e-22 96 29 6 234 3 rsuA Ribosomal small subunit pseudouridine synthase A Salmonella typhi
P55986 2.32e-22 96 28 6 250 3 HP_1459 Uncharacterized RNA pseudouridine synthase HP_1459 Helicobacter pylori (strain ATCC 700392 / 26695)
O05668 3.06e-22 96 31 7 244 3 ML1370 Uncharacterized RNA pseudouridine synthase ML1370 Mycobacterium leprae (strain TN)
Q9ZJG0 4.95e-22 95 28 6 250 3 jhp_1352 Uncharacterized RNA pseudouridine synthase jhp_1352 Helicobacter pylori (strain J99 / ATCC 700824)
P45104 5.76e-22 97 26 7 281 1 rluB Ribosomal large subunit pseudouridine synthase B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4UL59 6.98e-22 94 29 5 228 3 RF_0863 Uncharacterized RNA pseudouridine synthase RF_0863 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q87NB7 1.01e-21 96 27 6 243 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q55578 1.22e-21 94 31 5 216 3 slr0361 Uncharacterized RNA pseudouridine synthase slr0361 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P57369 1.64e-21 94 28 7 248 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0AA46 1.8e-21 93 29 6 234 3 rsuA Ribosomal small subunit pseudouridine synthase A Shigella flexneri
P0AA43 1.8e-21 93 29 6 234 1 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli (strain K12)
P0AA44 1.8e-21 93 29 6 234 3 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA45 1.8e-21 93 29 6 234 3 rsuA Ribosomal small subunit pseudouridine synthase A Escherichia coli O157:H7
Q9I5J6 6.56e-21 92 28 5 232 3 rsuA Ribosomal small subunit pseudouridine synthase A Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8ZGM2 2.21e-20 90 27 6 236 3 rsuA Ribosomal small subunit pseudouridine synthase A Yersinia pestis
O66829 4.2e-20 90 27 6 231 3 aq_554 Uncharacterized RNA pseudouridine synthase aq_554 Aquifex aeolicus (strain VF5)
Q9CPN4 1.14e-19 89 26 5 230 3 rsuA Ribosomal small subunit pseudouridine synthase A Pasteurella multocida (strain Pm70)
Q9ZD06 2.48e-19 88 28 6 229 3 RP544 Uncharacterized RNA pseudouridine synthase RP544 Rickettsia prowazekii (strain Madrid E)
Q9CMY9 4.37e-19 89 28 10 289 3 rluB Ribosomal large subunit pseudouridine synthase B Pasteurella multocida (strain Pm70)
Q8D8C0 4.42e-19 89 26 6 241 3 rluB Ribosomal large subunit pseudouridine synthase B Vibrio vulnificus (strain CMCP6)
Q92HG4 5.15e-19 87 29 6 230 3 RC0807 Uncharacterized RNA pseudouridine synthase RC0807 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q68WJ1 1.01e-18 86 29 6 230 3 RT0532 Uncharacterized RNA pseudouridine synthase RT0532 Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P42395 1.54e-18 86 29 6 244 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8P8M6 2.27e-18 88 30 7 239 3 rluB Ribosomal large subunit pseudouridine synthase B Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8FIB6 2.47e-18 84 30 4 178 3 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8PK58 3.55e-18 87 32 6 221 3 rluB Ribosomal large subunit pseudouridine synthase B Xanthomonas axonopodis pv. citri (strain 306)
Q87BI2 9.12e-18 86 31 6 221 3 rluB Ribosomal large subunit pseudouridine synthase B Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PAP2 1.01e-17 86 31 6 221 3 rluB Ribosomal large subunit pseudouridine synthase B Xylella fastidiosa (strain 9a5c)
Q8L960 1.35e-17 85 28 7 247 1 SVR1 Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Arabidopsis thaliana
O51155 1.45e-17 83 27 3 220 3 BB_0129 Uncharacterized RNA pseudouridine synthase BB_0129 Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q8DAS3 1.59e-17 83 30 4 176 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio vulnificus (strain CMCP6)
P75966 1.62e-17 82 30 4 178 1 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli (strain K12)
Q83LF6 4.32e-17 81 30 4 178 3 rluE Ribosomal large subunit pseudouridine synthase E Shigella flexneri
P44827 4.46e-17 82 29 4 192 3 rluE Ribosomal large subunit pseudouridine synthase E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8X724 1.08e-16 80 29 4 178 3 rluE Ribosomal large subunit pseudouridine synthase E Escherichia coli O157:H7
Q9HX48 2.08e-16 79 30 4 175 3 rluE Ribosomal large subunit pseudouridine synthase E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8ZFQ3 4.64e-16 78 28 4 178 3 rluE Ribosomal large subunit pseudouridine synthase E Yersinia pestis
Q9F855 1.57e-15 77 29 4 176 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q87QD4 2.01e-15 77 26 5 236 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q87QY8 2.18e-15 77 29 4 175 3 rluE Ribosomal large subunit pseudouridine synthase E Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8ZPZ1 2.5e-15 76 27 4 180 3 rluE Ribosomal large subunit pseudouridine synthase E Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P72581 6.2e-15 76 27 6 197 3 slr0612 Uncharacterized RNA pseudouridine synthase slr0612 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9CKK7 5.5e-14 73 25 5 190 3 rluE Ribosomal large subunit pseudouridine synthase E Pasteurella multocida (strain Pm70)
Q8D8X2 3.18e-13 71 26 6 236 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio vulnificus (strain CMCP6)
Q8Z7G6 3.35e-13 70 26 4 180 3 rluE Ribosomal large subunit pseudouridine synthase E Salmonella typhi
Q8PDR2 4.94e-13 69 27 4 177 3 rluE Ribosomal large subunit pseudouridine synthase E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8PQN3 1.19e-12 68 26 4 177 3 rluE Ribosomal large subunit pseudouridine synthase E Xanthomonas axonopodis pv. citri (strain 306)
Q9KRK5 1.95e-12 68 25 7 236 3 rsuA Ribosomal small subunit pseudouridine synthase A Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q89AL1 3.35e-10 62 25 7 235 3 rluB Ribosomal large subunit pseudouridine synthase B Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_08630
Feature type CDS
Gene rluF
Product 23S rRNA pseudouridine(2604) synthase RluF
Location 128648 - 129544 (strand: 1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2183
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00849 RNA pseudouridylate synthase
PF01479 S4 domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1187 Translation, ribosomal structure and biogenesis (J) J Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] - -

Protein Sequence

METGSSVRLNKYISESGICSRRDADRYIEQGLVLINGKRAAIGSQVMPGDVVKVNGQLIEAREQDDLVLIALNKPVGIVSTTDEGEKDNIVDFVNHSTRIFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHQKEYVVTVNKPITDDFIRGMGAGVPILGTVTKKCKVKQEAPFVFRITLIQGLNRQIRRMCEHFGYEVTKLERVRIMNISLTGIPVGEWRDLTDDELVELFDAIEKSSSEDKKVKKPAAKPQKRDNKIKVAPPVYPGSDKQQKKKESSSDNNRQRFAQAGRKKKKR

Flanking regions ( +/- flanking 50bp)

GATATCACACGATAATTGGTGTATATTGCGCGCTTTTCAGGGGGGAAGATATGGAAACGGGTTCATCTGTGCGTCTTAATAAATACATCAGCGAAAGCGGCATCTGCTCCCGCCGGGATGCGGACCGTTATATTGAGCAGGGATTGGTCCTGATCAACGGCAAACGTGCGGCTATCGGCTCACAGGTAATGCCGGGTGATGTGGTTAAAGTCAACGGACAACTGATTGAGGCGCGGGAGCAGGATGATCTGGTGCTGATTGCCCTCAATAAACCGGTGGGTATCGTCAGCACCACCGATGAAGGCGAGAAAGATAATATTGTCGATTTCGTCAATCACAGCACCCGTATCTTCCCTATCGGCCGCCTGGATAAAGATTCACAGGGATTGATTTTCCTGACTAACCACGGCGATCTGGTAAATAAAATTCTGCGTGCCGGTAACGATCACCAGAAAGAGTATGTGGTGACGGTAAATAAACCGATCACCGATGATTTTATCCGTGGTATGGGCGCGGGTGTGCCGATCCTCGGTACGGTGACCAAAAAATGTAAAGTGAAGCAGGAAGCACCCTTTGTTTTCCGCATCACGCTGATTCAGGGGCTGAACCGTCAGATCCGCCGCATGTGTGAGCATTTCGGTTATGAAGTGACGAAACTTGAGCGTGTCCGCATCATGAATATCAGCCTGACTGGGATCCCGGTGGGGGAATGGCGTGATTTAACCGATGACGAGCTGGTCGAACTCTTTGATGCGATTGAAAAATCTTCCTCTGAAGATAAAAAAGTCAAAAAGCCGGCTGCAAAACCACAGAAGCGCGATAACAAAATTAAAGTTGCTCCGCCGGTTTATCCGGGCTCAGACAAACAGCAGAAGAAGAAAGAGAGCAGCAGCGATAATAACCGCCAGCGTTTTGCCCAGGCAGGGCGGAAGAAGAAGAAACGATAATTATCTGTCTGCTGAAAAGTAATCCGCAGTACAGGTAATAAGCGGATAAC