Orthogroup:group_1159


Homologs in group_1159

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06235 FBDBKF_06235 Morganella morganii S1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
EHELCC_09280 EHELCC_09280 Morganella morganii S2 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
NLDBIP_09660 NLDBIP_09660 Morganella morganii S4 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
LHKJJB_08095 LHKJJB_08095 Morganella morganii S3 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
HKOGLL_07645 HKOGLL_07645 Morganella morganii S5 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
F4V73_RS15680 F4V73_RS15680 Morganella psychrotolerans rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
PMI_RS11520 PMI_RS11520 Proteus mirabilis HI4320 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA

Distribution of group_1159 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1159 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1159

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1159.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rluA 7

Product

# Product Occurence
1 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0564 7 J Translation, ribosomal structure and biogenesis (J) Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06177 7 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00849 7 RNA pseudouridylate synthase

Annotations of the 137 SwissProt hits

Annotation Number of occurrences
21S rRNA pseudouridine(2819) synthase 3
Bifunctional protein RIB2 1
Dual-specificity RNA pseudouridine synthase RluA 13
MATH and LRR domain-containing protein PFE0570w 1
Mitochondrial mRNA pseudouridine synthase RPUSD3 1
Mitochondrial mRNA pseudouridine synthase Rpusd3 1
Pseudouridylate synthase C18B11.02c 1
Pseudouridylate synthase RPUSD2 2
Pseudouridylate synthase RPUSD4, mitochondrial 6
RNA pseudouridine synthase 1 2
RNA pseudouridine synthase 2, chloroplastic 2
RNA pseudouridine synthase 3, mitochondrial 2
RNA pseudouridine synthase 4, mitochondrial 2
RNA pseudouridine synthase 5 2
RNA pseudouridine synthase 7 2
RNA pseudouridylate synthase domain-containing protein 1 4
Ribosomal large subunit pseudouridine synthase C 22
Ribosomal large subunit pseudouridine synthase D 28
Uncharacterized RNA pseudouridine synthase Caur_0901 1
Uncharacterized RNA pseudouridine synthase Cpar_0723 1
Uncharacterized RNA pseudouridine synthase HI_0042 1
Uncharacterized RNA pseudouridine synthase HP_0347 1
Uncharacterized RNA pseudouridine synthase HP_0745 1
Uncharacterized RNA pseudouridine synthase HP_0956 1
Uncharacterized RNA pseudouridine synthase MCAP_0714 1
Uncharacterized RNA pseudouridine synthase MG209 1
Uncharacterized RNA pseudouridine synthase MG209 homolog 1
Uncharacterized RNA pseudouridine synthase MG370 1
Uncharacterized RNA pseudouridine synthase MG370 homolog 1
Uncharacterized RNA pseudouridine synthase MT1592 1
Uncharacterized RNA pseudouridine synthase Mb1567 1
Uncharacterized RNA pseudouridine synthase Rv1540 1
Uncharacterized RNA pseudouridine synthase YhcT 1
Uncharacterized RNA pseudouridine synthase YjbO 1
Uncharacterized RNA pseudouridine synthase YlyB 1
Uncharacterized RNA pseudouridine synthase ZMO0505 1
Uncharacterized RNA pseudouridine synthase aq_1464 1
Uncharacterized RNA pseudouridine synthase aq_1758 1
Uncharacterized RNA pseudouridine synthase jhp_0321 1
Uncharacterized RNA pseudouridine synthase jhp_0682 1
Uncharacterized RNA pseudouridine synthase jhp_0890 1
Uncharacterized RNA pseudouridine synthase slr1592 1
Uncharacterized RNA pseudouridine synthase slr1629 1
Uncharacterized protein K07E8.7 1
tRNA pseudouridine synthase C 14
tRNA pseudouridine(31) synthase 1
tRNA pseudouridine(32) synthase, mitochondrial 1

Protein length

Min length 216
Max length 217
Mean length (sd) 216.1 (0.4)
Median length 216.0

Protein length distribution