PF00589

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00589
Protein list: lists the 106 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00589
Description Phage integrase family

Occurence in the database

PF00589 is associated with 106 different proteins
The 106 proteins are classified into 13 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_107 FBDBKF_00360 46239 47390 1 Integrase Morganella morganii S1
1 group_2644 FBDBKF_03835 171075 172145 -1 xerD Site-specific recombinase XerD Morganella morganii S1
2 group_885 FBDBKF_04100 5787 6701 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S1
3 group_174 FBDBKF_08355 45803 46720 1 xerC tyrosine recombinase XerC Morganella morganii S1
4 group_31 FBDBKF_08880 157601 158854 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S1
5 group_14 FBDBKF_08955 8204 8755 1 xerD Site-specific recombinase XerD Morganella morganii S1
6 group_14 FBDBKF_09000 16444 17004 -1 xerD Site-specific recombinase XerD Morganella morganii S1
7 group_14 FBDBKF_09050 25096 25659 1 xerD Site-specific recombinase XerD Morganella morganii S1
8 group_107 FBDBKF_11145 54874 56037 -1 xerD Site-specific recombinase XerD Morganella morganii S1
9 group_1828 FBDBKF_13295 37004 38227 -1 Integrase-like protein Morganella morganii S1
10 group_31 FBDBKF_14415 83204 84466 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S1
11 group_3450 FBDBKF_15610 53231 54400 1 xerC Tyrosine recombinase XerC Morganella morganii S1
12 group_3474 FBDBKF_16670 16781 17743 -1 Tyrosine-type recombinase/integrase Morganella morganii S1
13 group_3500 FBDBKF_17095 1760 2962 -1 Integrase Morganella morganii S1
14 group_376 FBDBKF_18750 27491 28624 1 Integrase Morganella morganii S1
15 group_31 FBDBKF_19690 1959 3236 -1 Integrase Morganella morganii S1
16 group_3611 FBDBKF_20115 9687 10082 -1 Integrase Morganella morganii S1
17 group_3638 FBDBKF_20630 33 899 1 xerD integron integrase Morganella morganii S1
18 group_107 EHELCC_01185 261478 262629 -1 Integrase Morganella morganii S2
19 group_3500 EHELCC_01795 352539 353741 1 Integrase Morganella morganii S2
20 group_107 EHELCC_05080 3431 4594 1 xerD Site-specific recombinase XerD Morganella morganii S2
21 group_885 EHELCC_05390 65244 66158 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S2
22 group_2644 EHELCC_06700 74958 76028 1 xerD Site-specific recombinase XerD Morganella morganii S2
23 group_31 EHELCC_07865 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S2
24 group_1828 EHELCC_08800 236964 238187 1 Integrase-like protein Morganella morganii S2
25 group_14 EHELCC_10360 120445 121008 -1 xerD Site-specific recombinase XerD Morganella morganii S2
26 group_14 EHELCC_10410 129100 129660 1 xerD Site-specific recombinase XerD Morganella morganii S2
27 group_14 EHELCC_10455 137349 137900 -1 xerD Site-specific recombinase XerD Morganella morganii S2
28 group_3474 EHELCC_10790 196028 196990 1 Tyrosine-type recombinase/integrase Morganella morganii S2
29 group_31 EHELCC_12645 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S2
30 group_174 EHELCC_13170 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S2
31 group_376 EHELCC_15325 27491 28624 1 Integrase Morganella morganii S2
32 group_3450 EHELCC_15970 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S2
33 group_3611 EHELCC_19350 2615 3010 1 Integrase Morganella morganii S2
34 group_3638 EHELCC_19910 33 899 1 xerD integron integrase Morganella morganii S2
35 group_3500 NLDBIP_01665 326395 327597 -1 Integrase Morganella morganii S4
36 group_107 NLDBIP_02275 417507 418658 1 Integrase Morganella morganii S4
37 group_107 NLDBIP_05400 44504 45667 1 xerD Site-specific recombinase XerD Morganella morganii S4
38 group_885 NLDBIP_05710 106309 107223 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S4
39 group_2644 NLDBIP_07025 74831 75901 1 xerD Site-specific recombinase XerD Morganella morganii S4
40 group_31 NLDBIP_08190 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S4
41 group_1828 NLDBIP_09125 236964 238187 1 Integrase-like protein Morganella morganii S4
42 group_14 NLDBIP_10705 98716 99279 -1 xerD Site-specific recombinase XerD Morganella morganii S4
43 group_14 NLDBIP_10755 107371 107931 1 xerD Site-specific recombinase XerD Morganella morganii S4
44 group_14 NLDBIP_10800 115620 116171 -1 xerD Site-specific recombinase XerD Morganella morganii S4
45 group_3474 NLDBIP_11135 174299 175261 1 Tyrosine-type recombinase/integrase Morganella morganii S4
46 group_31 NLDBIP_12985 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S4
47 group_174 NLDBIP_13510 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S4
48 group_376 NLDBIP_15855 27491 28624 1 Integrase Morganella morganii S4
49 group_3450 NLDBIP_16400 26963 28132 -1 xerC Tyrosine recombinase XerC Morganella morganii S4
50 group_3611 NLDBIP_19480 2615 3010 1 Integrase Morganella morganii S4
51 group_3638 NLDBIP_19905 203 1216 -1 intI1 class 1 integron integrase IntI1 Morganella morganii S4
52 group_3500 LHKJJB_00370 65088 66290 1 Integrase Morganella morganii S3
53 group_107 LHKJJB_02280 22028 23191 1 xerD Site-specific recombinase XerD Morganella morganii S3
54 group_885 LHKJJB_02590 83833 84747 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S3
55 group_107 LHKJJB_03790 24748 25899 1 Integrase Morganella morganii S3
56 group_1828 LHKJJB_05140 18972 20195 -1 Integrase-like protein Morganella morganii S3
57 group_31 LHKJJB_06075 223378 224640 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S3
58 group_2644 LHKJJB_06560 38577 39647 1 xerD Site-specific recombinase XerD Morganella morganii S3
59 group_3474 LHKJJB_10220 16267 17229 -1 Tyrosine-type recombinase/integrase Morganella morganii S3
60 group_14 LHKJJB_10555 75357 75908 1 xerD Site-specific recombinase XerD Morganella morganii S3
61 group_14 LHKJJB_10600 83597 84157 -1 xerD Site-specific recombinase XerD Morganella morganii S3
62 group_14 LHKJJB_10650 92249 92812 1 xerD Site-specific recombinase XerD Morganella morganii S3
63 group_174 LHKJJB_13045 44521 45438 1 xerC tyrosine recombinase XerC Morganella morganii S3
64 group_31 LHKJJB_13570 156319 157572 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S3
65 group_376 LHKJJB_15985 88062 89195 -1 Integrase Morganella morganii S3
66 group_3450 LHKJJB_16405 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S3
67 group_3611 LHKJJB_19470 9937 10332 -1 Integrase Morganella morganii S3
68 group_3638 LHKJJB_19875 203 1069 -1 xerD integron integrase Morganella morganii S3
69 group_3500 HKOGLL_00410 70599 71801 1 Integrase Morganella morganii S5
70 group_107 HKOGLL_03255 261683 262834 -1 Integrase Morganella morganii S5
71 group_2644 HKOGLL_04370 193740 194810 -1 xerD Site-specific recombinase XerD Morganella morganii S5
72 group_31 HKOGLL_04840 17110 18372 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S5
73 group_1828 HKOGLL_05775 221555 222778 1 Integrase-like protein Morganella morganii S5
74 group_885 HKOGLL_06065 5697 6611 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S5
75 group_31 HKOGLL_11460 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S5
76 group_174 HKOGLL_11985 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S5
77 group_14 HKOGLL_13615 8658 9209 1 xerD Site-specific recombinase XerD Morganella morganii S5
78 group_14 HKOGLL_13660 16898 17458 -1 xerD Site-specific recombinase XerD Morganella morganii S5
79 group_14 HKOGLL_13710 25550 26113 1 xerD Site-specific recombinase XerD Morganella morganii S5
80 group_376 HKOGLL_15105 87274 88407 -1 Integrase Morganella morganii S5
81 group_107 HKOGLL_15660 45468 46631 1 xerD Site-specific recombinase XerD Morganella morganii S5
82 group_3450 HKOGLL_16175 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S5
83 group_3474 HKOGLL_16385 16276 17238 -1 Tyrosine-type recombinase/integrase Morganella morganii S5
84 group_3611 HKOGLL_19360 2615 3010 1 Integrase Morganella morganii S5
85 group_3638 HKOGLL_19705 33 899 1 xerD integron integrase Morganella morganii S5
86 group_31 F4V73_RS02510 530175 531356 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
87 group_107 F4V73_RS06340 1318441 1319592 1 site-specific integrase Morganella psychrotolerans
88 group_885 F4V73_RS08540 1763791 1764705 -1 xerD site-specific tyrosine recombinase XerD Morganella psychrotolerans
89 group_174 F4V73_RS09555 10515 11432 1 xerC tyrosine recombinase XerC Morganella psychrotolerans
90 group_31 F4V73_RS10095 127299 128558 1 tyrosine-type recombinase/integrase Morganella psychrotolerans
91 group_14 F4V73_RS10920 325695 326258 -1 tyrosine-type DNA invertase Morganella psychrotolerans
92 group_14 F4V73_RS10970 334444 335004 1 tyrosine-type DNA invertase Morganella psychrotolerans
93 group_14 F4V73_RS11015 342690 343241 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
94 group_1828 F4V73_RS18035 52254 53363 -1 site-specific integrase Morganella psychrotolerans
95 group_14 PMI_RS01270 310101 310667 -1 mrpI phase variation DNA invertase MrpI Proteus mirabilis HI4320
96 group_376 PMI_RS02285 527077 528078 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
97 group_376 PMI_RS04385 984338 985471 -1 site-specific integrase Proteus mirabilis HI4320
98 group_376 PMI_RS04655 1029338 1030465 -1 phage integrase Arm DNA-binding domain-containing protein Proteus mirabilis HI4320
99 group_174 PMI_RS05890 1290737 1291729 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
100 group_174 PMI_RS09895 2145999 2146982 1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
101 group_885 PMI_RS09920 2152428 2153369 -1 xerD site-specific tyrosine recombinase XerD Proteus mirabilis HI4320
102 group_1828 PMI_RS12305 2728678 2729919 1 integrase family protein Proteus mirabilis HI4320
103 group_2644 PMI_RS12610 2793999 2795069 -1 site-specific integrase Proteus mirabilis HI4320
104 group_174 PMI_RS16605 3660010 3660933 1 xerC tyrosine recombinase XerC Proteus mirabilis HI4320
105 group_31 PMI_RS17290 3798109 3799374 1 integrase arm-type DNA-binding domain-containing protein Proteus mirabilis HI4320