PF00589


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00589, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 106 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00589
Description Phage integrase family

Occurence in the database

PF00589 is associated with 106 different proteins (see tab "Protein list" and "Profile")
The 106 proteins are classified into 13 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_110 FBDBKF_00360 46239 47390 1 Integrase Morganella morganii S1
1 group_2619 FBDBKF_03835 171075 172145 -1 xerD Site-specific recombinase XerD Morganella morganii S1
2 group_817 FBDBKF_04100 5787 6701 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S1
3 group_189 FBDBKF_08355 45803 46720 1 xerC tyrosine recombinase XerC Morganella morganii S1
4 group_50 FBDBKF_08880 157601 158854 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S1
5 group_22 FBDBKF_08955 8204 8755 1 xerD Site-specific recombinase XerD Morganella morganii S1
6 group_22 FBDBKF_09000 16444 17004 -1 xerD Site-specific recombinase XerD Morganella morganii S1
7 group_22 FBDBKF_09050 25096 25659 1 xerD Site-specific recombinase XerD Morganella morganii S1
8 group_110 FBDBKF_11145 54874 56037 -1 xerD Site-specific recombinase XerD Morganella morganii S1
9 group_2906 FBDBKF_13295 37004 38227 -1 Integrase-like protein Morganella morganii S1
10 group_50 FBDBKF_14415 83204 84466 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S1
11 group_3453 FBDBKF_15610 53231 54400 1 xerC Tyrosine recombinase XerC Morganella morganii S1
12 group_3474 FBDBKF_16670 16781 17743 -1 Tyrosine-type recombinase/integrase Morganella morganii S1
13 group_2987 FBDBKF_17095 1760 2962 -1 Integrase Morganella morganii S1
14 group_417 FBDBKF_18750 27491 28624 1 Integrase Morganella morganii S1
15 group_50 FBDBKF_19690 1959 3236 -1 Integrase Morganella morganii S1
16 group_3613 FBDBKF_20115 9687 10082 -1 Integrase Morganella morganii S1
17 group_3639 FBDBKF_20630 33 899 1 xerD integron integrase Morganella morganii S1
18 group_110 EHELCC_01185 261478 262629 -1 Integrase Morganella morganii S2
19 group_2987 EHELCC_01795 352539 353741 1 Integrase Morganella morganii S2
20 group_110 EHELCC_05080 3431 4594 1 xerD Site-specific recombinase XerD Morganella morganii S2
21 group_817 EHELCC_05390 65244 66158 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S2
22 group_2619 EHELCC_06700 74958 76028 1 xerD Site-specific recombinase XerD Morganella morganii S2
23 group_50 EHELCC_07865 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S2
24 group_2906 EHELCC_08800 236964 238187 1 Integrase-like protein Morganella morganii S2
25 group_22 EHELCC_10360 120445 121008 -1 xerD Site-specific recombinase XerD Morganella morganii S2
26 group_22 EHELCC_10410 129100 129660 1 xerD Site-specific recombinase XerD Morganella morganii S2
27 group_22 EHELCC_10455 137349 137900 -1 xerD Site-specific recombinase XerD Morganella morganii S2
28 group_3474 EHELCC_10790 196028 196990 1 Tyrosine-type recombinase/integrase Morganella morganii S2
29 group_50 EHELCC_12645 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S2
30 group_189 EHELCC_13170 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S2
31 group_417 EHELCC_15325 27491 28624 1 Integrase Morganella morganii S2
32 group_3453 EHELCC_15970 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S2
33 group_3613 EHELCC_19350 2615 3010 1 Integrase Morganella morganii S2
34 group_3639 EHELCC_19910 33 899 1 xerD integron integrase Morganella morganii S2
35 group_2987 NLDBIP_01665 326395 327597 -1 Integrase Morganella morganii S4
36 group_110 NLDBIP_02275 417507 418658 1 Integrase Morganella morganii S4
37 group_110 NLDBIP_05400 44504 45667 1 xerD Site-specific recombinase XerD Morganella morganii S4
38 group_817 NLDBIP_05710 106309 107223 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S4
39 group_2619 NLDBIP_07025 74831 75901 1 xerD Site-specific recombinase XerD Morganella morganii S4
40 group_50 NLDBIP_08190 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S4
41 group_2906 NLDBIP_09125 236964 238187 1 Integrase-like protein Morganella morganii S4
42 group_22 NLDBIP_10705 98716 99279 -1 xerD Site-specific recombinase XerD Morganella morganii S4
43 group_22 NLDBIP_10755 107371 107931 1 xerD Site-specific recombinase XerD Morganella morganii S4
44 group_22 NLDBIP_10800 115620 116171 -1 xerD Site-specific recombinase XerD Morganella morganii S4
45 group_3474 NLDBIP_11135 174299 175261 1 Tyrosine-type recombinase/integrase Morganella morganii S4
46 group_50 NLDBIP_12985 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S4
47 group_189 NLDBIP_13510 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S4
48 group_417 NLDBIP_15855 27491 28624 1 Integrase Morganella morganii S4
49 group_3453 NLDBIP_16400 26963 28132 -1 xerC Tyrosine recombinase XerC Morganella morganii S4
50 group_3613 NLDBIP_19480 2615 3010 1 Integrase Morganella morganii S4
51 group_3639 NLDBIP_19905 203 1216 -1 intI1 class 1 integron integrase IntI1 Morganella morganii S4
52 group_2987 LHKJJB_00370 65088 66290 1 Integrase Morganella morganii S3
53 group_110 LHKJJB_02280 22028 23191 1 xerD Site-specific recombinase XerD Morganella morganii S3
54 group_817 LHKJJB_02590 83833 84747 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S3
55 group_110 LHKJJB_03790 24748 25899 1 Integrase Morganella morganii S3
56 group_2906 LHKJJB_05140 18972 20195 -1 Integrase-like protein Morganella morganii S3
57 group_50 LHKJJB_06075 223378 224640 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S3
58 group_2619 LHKJJB_06560 38577 39647 1 xerD Site-specific recombinase XerD Morganella morganii S3
59 group_3474 LHKJJB_10220 16267 17229 -1 Tyrosine-type recombinase/integrase Morganella morganii S3
60 group_22 LHKJJB_10555 75357 75908 1 xerD Site-specific recombinase XerD Morganella morganii S3
61 group_22 LHKJJB_10600 83597 84157 -1 xerD Site-specific recombinase XerD Morganella morganii S3
62 group_22 LHKJJB_10650 92249 92812 1 xerD Site-specific recombinase XerD Morganella morganii S3
63 group_189 LHKJJB_13045 44521 45438 1 xerC tyrosine recombinase XerC Morganella morganii S3
64 group_50 LHKJJB_13570 156319 157572 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S3
65 group_417 LHKJJB_15985 88062 89195 -1 Integrase Morganella morganii S3
66 group_3453 LHKJJB_16405 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S3
67 group_3613 LHKJJB_19470 9937 10332 -1 Integrase Morganella morganii S3
68 group_3639 LHKJJB_19875 203 1069 -1 xerD integron integrase Morganella morganii S3
69 group_2987 HKOGLL_00410 70599 71801 1 Integrase Morganella morganii S5
70 group_110 HKOGLL_03255 261683 262834 -1 Integrase Morganella morganii S5
71 group_2619 HKOGLL_04370 193740 194810 -1 xerD Site-specific recombinase XerD Morganella morganii S5
72 group_50 HKOGLL_04840 17110 18372 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S5
73 group_2906 HKOGLL_05775 221555 222778 1 Integrase-like protein Morganella morganii S5
74 group_817 HKOGLL_06065 5697 6611 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S5
75 group_50 HKOGLL_11460 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S5
76 group_189 HKOGLL_11985 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S5
77 group_22 HKOGLL_13615 8658 9209 1 xerD Site-specific recombinase XerD Morganella morganii S5
78 group_22 HKOGLL_13660 16898 17458 -1 xerD Site-specific recombinase XerD Morganella morganii S5
79 group_22 HKOGLL_13710 25550 26113 1 xerD Site-specific recombinase XerD Morganella morganii S5
80 group_417 HKOGLL_15105 87274 88407 -1 Integrase Morganella morganii S5
81 group_110 HKOGLL_15660 45468 46631 1 xerD Site-specific recombinase XerD Morganella morganii S5
82 group_3453 HKOGLL_16175 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S5
83 group_3474 HKOGLL_16385 16276 17238 -1 Tyrosine-type recombinase/integrase Morganella morganii S5
84 group_3613 HKOGLL_19360 2615 3010 1 Integrase Morganella morganii S5
85 group_3639 HKOGLL_19705 33 899 1 xerD integron integrase Morganella morganii S5
86 group_50 F4V73_RS02510 530175 531356 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
87 group_110 F4V73_RS06340 1318441 1319592 1 site-specific integrase Morganella psychrotolerans
88 group_817 F4V73_RS08540 1763791 1764705 -1 xerD site-specific tyrosine recombinase XerD Morganella psychrotolerans
89 group_189 F4V73_RS09555 10515 11432 1 xerC tyrosine recombinase XerC Morganella psychrotolerans
90 group_50 F4V73_RS10095 127299 128558 1 tyrosine-type recombinase/integrase Morganella psychrotolerans
91 group_22 F4V73_RS10920 325695 326258 -1 tyrosine-type DNA invertase Morganella psychrotolerans
92 group_22 F4V73_RS10970 334444 335004 1 tyrosine-type DNA invertase Morganella psychrotolerans
93 group_22 F4V73_RS11015 342690 343241 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
94 group_2987 F4V73_RS18035 52254 53363 -1 site-specific integrase Morganella psychrotolerans
95 group_22 PMI_RS01270 310101 310667 -1 mrpI phase variation DNA invertase MrpI Proteus mirabilis HI4320
96 group_417 PMI_RS02285 527077 528078 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
97 group_417 PMI_RS04385 984338 985471 -1 site-specific integrase Proteus mirabilis HI4320
98 group_417 PMI_RS04655 1029338 1030465 -1 phage integrase Arm DNA-binding domain-containing protein Proteus mirabilis HI4320
99 group_189 PMI_RS05890 1290737 1291729 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
100 group_189 PMI_RS09895 2145999 2146982 1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
101 group_817 PMI_RS09920 2152428 2153369 -1 xerD site-specific tyrosine recombinase XerD Proteus mirabilis HI4320
102 group_2906 PMI_RS12305 2728678 2729919 1 integrase family protein Proteus mirabilis HI4320
103 group_2619 PMI_RS12610 2793999 2795069 -1 site-specific integrase Proteus mirabilis HI4320
104 group_189 PMI_RS16605 3660010 3660933 1 xerC tyrosine recombinase XerC Proteus mirabilis HI4320
105 group_50 PMI_RS17290 3798109 3799374 1 integrase arm-type DNA-binding domain-containing protein Proteus mirabilis HI4320