Homologs in group_3500

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17095 FBDBKF_17095 100.0 Morganella morganii S1 - Integrase
EHELCC_01795 EHELCC_01795 100.0 Morganella morganii S2 - Integrase
LHKJJB_00370 LHKJJB_00370 100.0 Morganella morganii S3 - Integrase
HKOGLL_00410 HKOGLL_00410 100.0 Morganella morganii S5 - Integrase

Distribution of the homologs in the orthogroup group_3500

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3500

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76542 3.69e-50 177 32 12 399 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P32053 1.65e-48 172 29 10 400 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P37317 6.01e-47 168 29 9 395 3 int Integrase Shigella phage Sf6
P37326 6.33e-47 167 29 9 399 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P08320 7.57e-44 161 29 11 412 3 int Integrase Enterobacteria phage P4
P39347 1.31e-35 137 27 9 385 5 intB Putative protein IntB Escherichia coli (strain K12)
P06155 2.99e-24 106 24 10 404 3 int Integrase Enterobacteria phage phi80
P27078 5.96e-06 51 22 7 238 3 int Integrase Enterobacteria phage 434
P03700 9.22e-05 47 21 7 238 1 int Integrase Escherichia phage lambda

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01665
Feature type CDS
Gene -
Product Integrase
Location 326395 - 327597 (strand: -1)
Length 1203 (nucleotides) / 400 (amino acids)
In genomic island -

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3500
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MLTDTKLKSMKPQDRLYKVSDRDGLYVAVTKNGTISFRYDYRFNGRRETVTFGKYGPDGITLARARELLNDAKKQLNAGISPAASKRDGIDKRKGATVFGEYTVRYLREARLADSTRAMKASVIEREITPVLGRLTLEEISTQRLRSLCEKIRDRGGRATALQVREIVGAVFDYAIDRGYEISNPAAGIKASTIATFEPRERAMSPKEIGIFFRELENYSCYPTLKLAVKFVLLTLVRKTEFIKATWEEVDFKRAQWVIPKERMKRRREHVIYLSRQALDMMTGFQVCAMGSEYLIPGRYDIRKPLSNAALNNVIDGVVKRINEKGINFAPLTVHDLRRTASTLLHEAGFNSDWIEKCLAHEQKGVRAVYNKAEYAEQRRDMLQQWADMVDGWIEEGKAG

Flanking regions ( +/- flanking 50bp)

ACCGTCAAAAAAATAAAAATTATGACGGTATTAAAAGAGAGAATACCGACGTGCTGACTGATACAAAATTAAAAAGTATGAAGCCGCAGGACAGGCTTTATAAAGTGTCTGATCGTGATGGTTTGTATGTTGCTGTCACAAAAAACGGAACGATTTCATTCAGGTATGATTACCGCTTTAATGGCCGCCGTGAAACGGTGACGTTTGGCAAATACGGTCCTGACGGTATCACGCTGGCACGGGCCCGCGAATTACTGAATGATGCAAAAAAGCAGCTGAATGCAGGTATATCACCGGCTGCAAGCAAACGTGACGGTATCGATAAGCGAAAGGGGGCGACGGTATTCGGTGAATATACCGTCAGATATCTGCGTGAAGCCCGCCTGGCGGATTCGACACGGGCAATGAAAGCCTCAGTAATCGAACGTGAGATAACGCCGGTGTTGGGTCGTCTGACGCTGGAAGAGATAAGTACCCAGCGGTTACGGTCATTGTGTGAAAAGATCCGTGACCGTGGCGGACGGGCAACCGCATTACAGGTACGTGAGATTGTTGGCGCGGTATTTGATTATGCCATTGACCGCGGCTATGAGATAAGTAACCCGGCAGCAGGTATTAAAGCATCCACTATTGCCACCTTTGAGCCGCGTGAGCGTGCTATGTCACCAAAAGAGATCGGCATATTCTTCCGGGAACTGGAGAACTACAGCTGTTATCCGACCCTGAAGCTGGCTGTGAAATTTGTACTGTTAACTCTGGTGCGGAAAACAGAATTTATCAAAGCTACCTGGGAAGAGGTCGATTTTAAACGTGCTCAGTGGGTGATCCCGAAAGAACGGATGAAGCGCCGCCGGGAGCATGTGATTTATCTCTCCCGGCAGGCACTGGATATGATGACCGGATTTCAGGTCTGCGCCATGGGGAGCGAATACCTGATCCCGGGGCGCTATGACATTCGCAAGCCACTGTCGAACGCGGCACTGAATAATGTGATTGATGGTGTGGTTAAACGGATAAATGAGAAGGGGATTAATTTTGCACCGCTGACGGTACATGACCTGCGCCGGACAGCCAGCACGCTGTTGCATGAGGCTGGGTTTAATTCCGACTGGATAGAGAAGTGTCTGGCCCACGAACAAAAAGGCGTCCGTGCCGTGTACAACAAAGCGGAATACGCGGAGCAGCGCCGCGACATGTTGCAGCAGTGGGCCGATATGGTTGACGGGTGGATTGAAGAGGGTAAAGCGGGGTAATTACTCGTCGCCTAACACTTTGCTGGCGATCAGGGATGAAAGATAACACG