Orthogroup:group_885


Homologs in group_885

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04100 FBDBKF_04100 Morganella morganii S1 xerD site-specific tyrosine recombinase XerD
EHELCC_05390 EHELCC_05390 Morganella morganii S2 xerD site-specific tyrosine recombinase XerD
NLDBIP_05710 NLDBIP_05710 Morganella morganii S4 xerD site-specific tyrosine recombinase XerD
LHKJJB_02590 LHKJJB_02590 Morganella morganii S3 xerD site-specific tyrosine recombinase XerD
HKOGLL_06065 HKOGLL_06065 Morganella morganii S5 xerD site-specific tyrosine recombinase XerD
F4V73_RS08540 F4V73_RS08540 Morganella psychrotolerans xerD site-specific tyrosine recombinase XerD
PMI_RS09920 PMI_RS09920 Proteus mirabilis HI4320 xerD site-specific tyrosine recombinase XerD

Distribution of group_885 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_885 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_885

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_885.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xerD 7

Product

# Product Occurence
1 site-specific tyrosine recombinase XerD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4974 7 L Replication, recombination and repair (L) Site-specific recombinase XerD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04763 7 integrase/recombinase XerD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 7 Phage integrase family
PF02899 7 Phage integrase, N-terminal SAM-like domain

Annotations of the 372 SwissProt hits

Annotation Number of occurrences
Integrase 4
Integrase/recombinase 3
Integrase/recombinase xerD homolog 1
Probable integrase/recombinase 1
Probable integrase/recombinase protein MJ0367 1
Putative integrase 1
Putative integrase/recombinase y4eF 1
Putative integrase/recombinase y4gC 1
Putative integrase/recombinase y4qK 1
Putative integrase/recombinase y4rA 1
Putative integrase/recombinase y4rB 1
Putative integrase/recombinase y4rC 1
Putative integrase/recombinase y4rD 1
Putative integrase/recombinase y4rE 1
Putative integrase/recombinase y4rF 1
Putative tyrosine recombinase CA_C2066 1
Putative tyrosine recombinase TTE1313 1
Putative tyrosine recombinase XerC 2
Resolvase 2
TnP I resolvase 1
Transposase A from transposon Tn554 3
Transposase B from transposon PsiTn554 1
Transposase B from transposon Tn554 3
Transposase from transposon Tn1545 2
Transposase from transposon Tn916 1
Type 1 fimbriae regulatory protein FimB 2
Type 1 fimbriae regulatory protein FimE 3
Tyrosine recombinase EUBREC_2677 1
Tyrosine recombinase Synpcc7942_B2651 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase Tlet_1492 1
Tyrosine recombinase UU222 1
Tyrosine recombinase XerA 7
Tyrosine recombinase XerC 199
Tyrosine recombinase XerC 1 1
Tyrosine recombinase XerC 2 1
Tyrosine recombinase XerC-like 1
Tyrosine recombinase XerD 68
Tyrosine recombinase XerD-like 4
Tyrosine recombinase XerH 2
Tyrosine recombinase XerS 41
Tyrosine recombinase slr0733 1

Protein length

Min length 304
Max length 313
Mean length (sd) 305.3 (3.4)
Median length 304.0

Protein length distribution