Homologs in group_50

Help

13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14415 FBDBKF_14415 61.5 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 67.3 Morganella morganii S1 - Integrase
EHELCC_07865 EHELCC_07865 61.5 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 100.0 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 61.5 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 100.0 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 61.5 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 100.0 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 61.5 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 100.0 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 42.2 Morganella psychrotolerans - tyrosine-type recombinase/integrase
F4V73_RS10095 F4V73_RS10095 57.0 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 83.0 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_50

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39347 0.0 607 73 1 390 5 intB Putative protein IntB Escherichia coli (strain K12)
P08320 3.17e-179 509 59 2 411 3 int Integrase Enterobacteria phage P4
P32053 1.56e-79 254 36 8 402 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P37317 2.38e-77 248 33 7 401 3 int Integrase Shigella phage Sf6
P37326 8.36e-77 246 33 7 401 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P76542 7.56e-76 244 37 11 405 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P06155 5.22e-11 67 21 17 426 3 int Integrase Enterobacteria phage phi80
B7IFN3 0.00063 45 24 12 287 3 THA_404 Tyrosine recombinase THA_404 Thermosipho africanus (strain TCF52B)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_08880
Feature type CDS
Gene fimB
Product Integrase/recombinase, includes phage integrase
Location 157601 - 158854 (strand: 1)
Length 1254 (nucleotides) / 417 (amino acids)

Contig

Accession contig_9
Length 163724 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

Actions

Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALTDTKVRAAKPDEKAYTLTDSDGLFLYVHPNGSKYWRFRFRFGGKQHLMAFGVYPEISLADARERRDAARKQVALGIDPRELKRELKEEQQKEFNTFEKVARDWHATNKKWSEGHSHRVLKSLEDNIFADIGKYNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQSGLIDYNPAQDMAGALSAGKRIHRPALELNRLPEFLQRIENYSGRLLTKLAVKLTLLVFIRSSELRFARWEEIDFINAMWTIPAERQPIEGVKFSYRGSKMRTPHLVPLSEQAINILKQIQRLSGDHELIFIGDHNPRKPMSENTVNNALRAMGYDTKTEVCGHGFRTMACSSLIESGIWSKDAVERQMSHQERNSVRAAYIHKAEHLEERRLMVQWWADYLDVNREKWISPFNYRKRD

Flanking regions ( +/- flanking 50bp)

CTGAGATATCTCGTTTATATACTCACTTTGGGGTGAAGAGGACAAAGAATATGGCATTAACCGATACGAAAGTTCGTGCAGCCAAACCAGACGAAAAAGCTTATACACTGACAGATAGTGATGGCTTGTTTCTCTATGTTCACCCCAATGGCTCCAAATACTGGCGCTTTCGTTTTCGCTTTGGCGGTAAACAGCATTTAATGGCCTTTGGCGTATACCCTGAGATTTCTTTAGCAGATGCAAGAGAAAGAAGGGATGCAGCCAGAAAGCAAGTTGCTTTAGGTATTGACCCTCGCGAACTCAAGAGAGAACTAAAGGAAGAGCAGCAAAAAGAATTTAACACATTCGAGAAGGTTGCTCGCGATTGGCATGCAACCAATAAGAAATGGTCTGAAGGCCATAGCCATCGAGTGCTCAAAAGTCTTGAGGACAATATCTTTGCAGATATTGGCAAATATAATATTGCTGAGCTGAAAACTCGTGATCTACTTGAACCTATTAAAGCCGTGGAGATGTCTGGACGTCTTGAAGTGGCTGCTCGTTTACAGCAACGTGTGACAGCGATTATGCGGTATGCAGTACAAAGCGGATTAATTGATTATAACCCTGCACAGGATATGGCTGGTGCTCTATCAGCCGGAAAGCGTATACATCGCCCAGCCCTTGAACTTAATAGGCTGCCAGAGTTTTTGCAAAGGATAGAAAATTACTCTGGCAGACTGCTGACTAAACTGGCCGTTAAACTGACGTTATTAGTTTTTATCCGCTCCAGTGAACTTCGTTTTGCAAGATGGGAAGAAATTGATTTCATTAATGCAATGTGGACGATCCCAGCAGAGCGGCAACCAATTGAAGGTGTTAAATTTTCTTATCGCGGATCTAAAATGCGTACTCCTCATTTGGTCCCACTGAGTGAACAAGCTATAAATATATTAAAGCAGATCCAACGGTTAAGTGGCGACCATGAATTAATTTTTATCGGTGACCACAATCCCCGAAAGCCAATGAGTGAAAACACGGTTAATAATGCACTACGTGCTATGGGTTATGACACAAAAACTGAAGTTTGTGGGCATGGTTTCAGGACAATGGCATGCAGTTCATTAATCGAATCAGGAATATGGTCAAAAGATGCAGTAGAAAGACAGATGAGCCATCAGGAACGAAATTCTGTTCGGGCTGCTTACATTCATAAAGCAGAACATCTGGAAGAAAGACGATTGATGGTGCAATGGTGGGCTGACTATTTAGATGTAAACAGGGAAAAATGGATATCACCATTCAATTATAGGAAGCGCGATTAAGTATGAAATTGGGCAGAATTTAGCTTAGCGTGGATTGAAACTCAGCTTGG