Homologs in group_1828

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13295 FBDBKF_13295 41.8 Morganella morganii S1 - Integrase-like protein
EHELCC_08800 EHELCC_08800 41.8 Morganella morganii S2 - Integrase-like protein
NLDBIP_09125 NLDBIP_09125 41.8 Morganella morganii S4 - Integrase-like protein
LHKJJB_05140 LHKJJB_05140 41.8 Morganella morganii S3 - Integrase-like protein
HKOGLL_05775 HKOGLL_05775 41.8 Morganella morganii S5 - Integrase-like protein
F4V73_RS18035 F4V73_RS18035 29.8 Morganella psychrotolerans - site-specific integrase

Distribution of the homologs in the orthogroup group_1828

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1828

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06155 1.11e-37 144 26 9 401 3 int Integrase Enterobacteria phage phi80
P76542 3.02e-18 89 23 10 411 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P08320 2.05e-17 87 25 15 418 3 int Integrase Enterobacteria phage P4
P37317 1.73e-14 78 24 13 382 3 int Integrase Shigella phage Sf6
P37326 1.45e-13 75 23 13 386 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P39347 5.25e-09 61 21 8 352 5 intB Putative protein IntB Escherichia coli (strain K12)
P32053 0.000161 47 20 15 406 1 intA Prophage integrase IntA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12305
Feature type CDS
Gene -
Product integrase family protein
Location 2728678 - 2729919 (strand: 1)
Length 1242 (nucleotides) / 413 (amino acids)
In genomic island GI59

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1828
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALSVSWLDARLNKEAKETVVKADRDGLSARVSPKGKIVFQFRYRFDGKQQRVDIGTYPLMKLAEARNELDRLRAVLDQGRNPKLYLQQERAKYSANQSFESIFRDWIDSAGKQGLKEKTWHFQKRSSEIYLLPRLGKYPLTDINELSLRNCLREVSESSPSNTERLVSVLHKFYDWLIDEQILEINAAAGITAKKVGGKKGKRTRVLNDNEIRILWRYLHESKITEKNRIYIKLLLLLGGRKGELIQAEKHHFDLQSAMWTVPIEIRKQGEKIGAPIMRPLIKPAIELIELAMQMSKSTYLFPANGQEELATNGFDTTIPNNVKIWARRSLGIEMEHWSMHDLRRTMRTRMSAITTQEVAELMIGHSKKGLDAIYNQYQYLDEMRHAYDVWYQQLETIIEPTGFPFNWRFGQ

Flanking regions ( +/- flanking 50bp)

AGAATCACGTAAACAATCATTAAAATCAAAACTAGGGATGGGCTTATAACATGGCGTTATCAGTTAGCTGGCTCGATGCCAGGTTAAATAAAGAAGCAAAAGAAACCGTAGTAAAAGCCGACCGAGATGGGCTAAGTGCTCGGGTATCGCCCAAGGGCAAAATTGTTTTTCAGTTTCGTTATCGATTCGATGGCAAGCAACAGCGGGTAGACATAGGTACTTACCCACTAATGAAGCTTGCTGAAGCCAGGAATGAGCTGGATAGGTTAAGGGCGGTACTCGACCAGGGCAGAAACCCCAAGCTCTACCTACAGCAGGAACGGGCTAAGTATTCTGCCAACCAAAGCTTCGAATCGATTTTTCGAGACTGGATAGACTCTGCCGGTAAGCAAGGGCTAAAGGAGAAAACGTGGCACTTCCAAAAACGCAGCAGTGAAATATATTTGCTGCCCCGACTTGGCAAGTACCCATTAACTGACATCAATGAACTGTCCTTAAGAAACTGTCTTCGTGAGGTTTCGGAGTCGTCCCCTTCAAACACAGAACGCCTAGTGTCTGTACTGCATAAGTTCTATGACTGGCTGATTGATGAACAAATTTTGGAAATTAACGCTGCTGCTGGGATCACAGCAAAGAAGGTTGGCGGTAAAAAAGGAAAACGAACTCGGGTGCTAAATGACAACGAGATCAGGATACTTTGGCGCTATTTGCATGAGTCAAAAATCACTGAGAAGAACCGCATCTACATAAAATTGCTTCTGTTATTGGGAGGCCGTAAGGGAGAACTCATTCAAGCTGAAAAGCATCACTTTGACTTGCAATCTGCAATGTGGACAGTGCCCATAGAGATCCGCAAACAAGGTGAGAAAATTGGAGCGCCGATCATGCGGCCATTGATTAAGCCAGCTATTGAGCTGATTGAACTGGCGATGCAGATGAGCAAATCAACCTACTTGTTTCCCGCGAACGGACAAGAAGAGCTTGCCACAAATGGCTTTGATACCACTATTCCTAATAATGTGAAAATCTGGGCTCGCAGATCGCTTGGTATTGAGATGGAACACTGGTCTATGCATGATCTTCGCAGAACGATGCGAACGCGAATGTCTGCCATCACGACGCAAGAAGTTGCCGAGTTGATGATTGGCCACAGCAAAAAAGGGTTAGATGCTATCTACAACCAATATCAGTACCTGGATGAAATGCGTCATGCTTACGACGTTTGGTATCAACAGCTAGAAACCATCATCGAACCGACAGGCTTTCCATTCAACTGGCGTTTCGGACAGTAAAATAAAAGAAAGAGGCTCAGTCCTCTTTCTTCTCATACTCCTCCAAGTCT