Homologs in group_417

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18750 FBDBKF_18750 37.3 Morganella morganii S1 - Integrase
EHELCC_15325 EHELCC_15325 37.3 Morganella morganii S2 - Integrase
NLDBIP_15855 NLDBIP_15855 37.3 Morganella morganii S4 - Integrase
LHKJJB_15985 LHKJJB_15985 37.3 Morganella morganii S3 - Integrase
HKOGLL_15105 HKOGLL_15105 37.3 Morganella morganii S5 - Integrase
PMI_RS04385 PMI_RS04385 37.9 Proteus mirabilis HI4320 - site-specific integrase
PMI_RS04655 PMI_RS04655 38.9 Proteus mirabilis HI4320 - phage integrase Arm DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_417

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_417

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27078 2.68e-89 274 44 7 350 3 int Integrase Enterobacteria phage 434
P03700 3.84e-87 269 43 7 350 1 int Integrase Escherichia phage lambda
P16407 4.44e-86 266 42 8 351 3 int Integrase Escherichia phage HK022
P75969 8.85e-46 162 34 12 370 3 intE Prophage integrase IntE Escherichia coli (strain K12)
P27077 2.53e-41 151 30 11 366 3 int Integrase Enterobacteria phage P21

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02285
Feature type CDS
Gene -
Product tyrosine-type recombinase/integrase
Location 527077 - 528078 (strand: -1)
Length 1002 (nucleotides) / 333 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_417
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF00589 Phage integrase family
PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain
PF14659 Phage integrase, N-terminal SAM-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4973 Replication, recombination and repair (L) L Site-specific recombinase XerC

Protein Sequence

MGRSRSAKNKGLPPNLYLRKGIYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKESLVDRINNVHCVTLHEWLDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFISEYPKKAMAKLLRSTMLDAFNEAIADGVIKENPVSVTKPPKTSVQRSRLSLEEFKYALEHTNDKYRHMFLLAVLTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESIGYSIKDVLNLMNRSSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIRSLSARLYEEEKSAEFAKKILGHKSMRMTDKYLDDRGNGYVEL

Flanking regions ( +/- flanking 50bp)

AACAAATGACAAAATGGTAAGGGAACCGCAATATTTAATGGAGAAAATTAATGGGCAGAAGCAGAAGTGCAAAGAACAAGGGTTTACCGCCTAACTTGTATTTGCGTAAAGGGATTTACTATTACAGGGATGTAAGAACTAAAAAGGAATTTTCTGTTGGCTCAAACAAATCATTAGCAATAACCGAAGCCATACAAGCCAATTTGGCTATTTATAAACCTAAAGAGTCATTAGTTGACAGAATTAATAATGTTCACTGTGTAACATTGCATGAGTGGCTTGATACTTATAGGGGGAAGGTAAACAGCCGGGGGTTAAAAGAGAAGACGCTCTACGATTACGAATCAAGAATAAAGTTAATCAAATTACACTTTAATGACTGTCCAATTGAGAATGTAACACCAAGAGATGTAGCCACATTTATTTCAGAGTACCCTAAAAAGGCAATGGCAAAATTACTAAGGTCCACTATGCTAGATGCTTTTAATGAAGCCATTGCGGATGGTGTGATAAAGGAAAATCCCGTTTCCGTGACAAAGCCGCCAAAAACAAGCGTTCAGCGCTCAAGGTTATCGCTAGAAGAGTTTAAATACGCCTTGGAGCACACAAATGACAAATATAGGCATATGTTTCTACTAGCGGTCCTTACAGCTCAGCGCATTAGCGATATTATCAATATGAAGTGGGATGATATAAAAAATGATAGGCTGTATGTCACCCAAATAAAAACAGGTTCTAAAGTAGCAATACCACTCTCATTAAGACTTGAGTCTATTGGTTATTCTATTAAAGATGTTTTAAATCTCATGAATAGGAGCTCAGATAAAATCTGTGGCAATACCACAGCAAAAACATTAAGAGGTAAGTTTATCGAAGCCCTACCTGAGTATTTAGAGAATAAACCAACATTTCATGAAATTAGAAGTTTATCTGCAAGATTATATGAAGAAGAAAAAAGTGCTGAGTTTGCAAAGAAAATACTTGGCCACAAATCTATGAGAATGACAGATAAATACCTTGATGATAGAGGTAATGGCTACGTTGAATTGTGAGTTAATAGTGAGTGATTGTGAGTATCGATATGTATGACATTGATTTATAA