Homologs in group_50

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08880 FBDBKF_08880 42.2 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 40.6 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 40.8 Morganella morganii S1 - Integrase
EHELCC_07865 EHELCC_07865 40.6 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 42.2 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 40.6 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 42.2 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 40.6 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 42.2 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 40.6 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 42.2 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS10095 F4V73_RS10095 40.7 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 42.5 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_50

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37317 3.03e-119 354 46 2 390 3 int Integrase Shigella phage Sf6
P37326 7.59e-118 350 46 2 390 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P08320 3.13e-96 297 40 8 405 3 int Integrase Enterobacteria phage P4
P76542 2.54e-92 286 41 6 389 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P39347 3.97e-92 285 39 6 377 5 intB Putative protein IntB Escherichia coli (strain K12)
P32053 1.78e-86 271 38 1 384 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P06155 2.48e-18 89 24 10 368 3 int Integrase Enterobacteria phage phi80
Q87DI2 9.98e-07 53 23 11 267 3 xerC Tyrosine recombinase XerC Xylella fastidiosa (strain Temecula1 / ATCC 700964)
B2IA18 9.98e-07 53 23 11 267 3 xerC Tyrosine recombinase XerC Xylella fastidiosa (strain M23)
B7IFN3 6.39e-05 48 24 10 263 3 THA_404 Tyrosine recombinase THA_404 Thermosipho africanus (strain TCF52B)
Q8TZV9 0.000259 46 28 3 128 3 xerA Tyrosine recombinase XerA Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02510
Feature type CDS
Gene -
Product tyrosine-type recombinase/integrase
Location 530175 - 531356 (strand: -1)
Length 1182 (nucleotides) / 393 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MLLTDIQIRKAKPKDKAYTLNDGNGLSLLIEPNGSKGWRFRYRFAGKPKMISLGVYDTVTLAGARKKRDEAKTQLTENINPSDARKADKITLKFATENTFQAVAMEWHISKRAAWSEGYAEEILRCFENDVFPYIGNRPIDQIAPLELLAVLQKIEKRGALEQASKIRRRCGEVYRYAVITGRAKYNPAPDLSGAMNKPEVKHFPFLRENEIPDFVKALINYQGSKVTKYATQLLMLTGVRTVELRFAQWDEFDFENALWEIPKERMKKRRPHLVPLSPQVIAILNELKIITGNYPLLFPGRNDARKPISEATINKVIEKIGYKGRLTGHGFRHMMSTILHEKGFDSAWIELQLAHVDKNSIRGIYNHALYFNNRIIMMKWYSEKLYSSVNNI

Flanking regions ( +/- flanking 50bp)

CGTATACTATTGCGTATAGATCTAGGTTCAATGGAAAAACTATACACATTATGTTGCTTACAGACATCCAAATCCGCAAAGCAAAGCCCAAAGATAAAGCGTATACCCTGAATGATGGCAACGGGCTATCCCTGTTAATTGAACCTAACGGCTCAAAGGGCTGGCGTTTCCGGTACCGGTTCGCTGGTAAACCTAAAATGATCTCTTTGGGTGTGTACGATACCGTGACACTGGCAGGTGCCCGTAAAAAACGGGATGAAGCTAAAACACAGCTGACAGAAAATATCAATCCGAGTGATGCCCGCAAAGCCGACAAAATAACGCTCAAATTCGCCACCGAAAACACATTTCAGGCTGTTGCTATGGAATGGCATATATCAAAGCGTGCAGCCTGGTCTGAGGGTTATGCAGAGGAAATTTTGCGGTGTTTTGAAAATGACGTATTTCCGTATATTGGTAACCGCCCTATCGACCAAATAGCGCCGTTAGAGTTATTAGCCGTTCTGCAGAAAATTGAAAAGCGCGGAGCATTAGAGCAGGCCAGCAAGATCCGCAGGCGGTGCGGGGAAGTATACCGTTATGCAGTGATCACCGGCAGAGCAAAATATAACCCAGCACCTGATTTATCTGGTGCAATGAATAAACCGGAAGTGAAGCATTTTCCTTTCCTGCGTGAAAATGAAATACCCGATTTTGTTAAAGCACTGATTAACTATCAGGGTAGTAAAGTAACAAAATACGCGACACAGTTACTTATGTTGACTGGTGTCAGAACTGTAGAGCTACGCTTTGCTCAATGGGATGAATTTGATTTTGAAAATGCTCTGTGGGAGATTCCGAAAGAGCGCATGAAGAAACGCCGTCCTCACCTGGTGCCTTTATCACCACAGGTTATAGCAATCCTGAATGAACTGAAAATAATCACTGGCAATTATCCGTTACTTTTCCCCGGCAGAAATGACGCAAGAAAACCTATCAGTGAAGCGACTATCAACAAGGTGATCGAGAAAATTGGTTATAAAGGACGACTCACCGGGCACGGGTTCAGACACATGATGAGCACTATTCTGCATGAAAAAGGCTTTGATAGTGCATGGATTGAATTACAGCTTGCTCATGTTGATAAAAACTCCATCCGTGGAATTTATAATCATGCTTTATATTTTAATAACAGAATAATTATGATGAAATGGTATTCAGAAAAGCTATATTCTTCCGTTAATAACATCTAACATTAAACAAATATGATGTGTCATCTGAAATTGCTTATTTTTAGGTAAAC