Homologs in group_50

Help

13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08880 FBDBKF_08880 61.5 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 100.0 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 69.0 Morganella morganii S1 - Integrase
EHELCC_12645 EHELCC_12645 61.5 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 100.0 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 61.5 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 100.0 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 61.5 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 100.0 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 61.5 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 40.6 Morganella psychrotolerans - tyrosine-type recombinase/integrase
F4V73_RS10095 F4V73_RS10095 51.6 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 63.3 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_50

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39347 0.0 524 59 0 395 5 intB Putative protein IntB Escherichia coli (strain K12)
P08320 3.5e-156 451 52 1 410 3 int Integrase Enterobacteria phage P4
P37317 6.31e-73 236 35 7 400 3 int Integrase Shigella phage Sf6
P37326 5.55e-72 234 34 7 400 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P32053 6.77e-70 229 34 8 410 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P76542 7.57e-69 226 35 10 404 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P06155 1.96e-08 59 22 7 267 3 int Integrase Enterobacteria phage phi80

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_07865
Feature type CDS
Gene -
Product Integrase arm-type DNA-binding domain-containing protein
Location 32519 - 33781 (strand: -1)
Length 1263 (nucleotides) / 420 (amino acids)

Contig

Accession ZDB_217
Length 250991 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

Actions

Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALTDAKIRAAKAEEKSYKLTDGAGLHLLIHTNGSRYWRLRYRHQGKEKTLALGIYPIVSLSEARNKRDEARKLIAVGIDPTEKKRTEKAAASTELSFETMTRRWLNTNRKWSDSHRLKVIRSFETHIFPLIGQRIINSLTTPDLLMPVRQAENQEIFETANRLQQRIASVMRYAVQSGIISYNPALDTSGAITTVKVRHRPALALSRISELVKRIDNYSGYPMTQVAVMLNLLVFTRSSELRYARWSEIDFKGSLWTIPAERIPIPNVRFSHRGAKMRTPHLVPLSHQAITLLRILYDWTGEHELILTGAHNPHIPLSENTVNKALRLMGYDTKTDICGHGFRSMACSSLIESGLWSKDAVERQMSHQERNDVRAAYIHKAEHLDERRLMVQWWADFIDANRQQTISPFDYAKVNNPFR

Flanking regions ( +/- flanking 50bp)

ATGTTAGTTCGATGTATTTCTGTACCCACACATCTGCTCAGGAGACAACCATGGCACTGACCGATGCAAAAATACGGGCAGCTAAAGCAGAAGAAAAATCTTACAAACTCACCGATGGAGCTGGGCTCCATCTGCTTATCCACACTAACGGCTCACGCTACTGGCGACTCCGTTACCGACATCAGGGAAAAGAGAAAACTCTCGCGTTAGGAATCTACCCAATAGTCTCGTTATCTGAGGCTCGTAATAAACGTGATGAGGCCCGAAAGTTAATTGCTGTCGGTATTGATCCGACAGAAAAGAAACGGACGGAAAAAGCCGCAGCAAGTACTGAACTATCCTTTGAAACAATGACCCGAAGGTGGCTCAATACCAACAGAAAATGGTCTGACTCCCATCGTCTCAAAGTTATCCGCAGTTTTGAAACCCACATATTTCCTCTTATCGGACAGCGTATTATCAACTCATTGACCACTCCCGACTTGTTGATGCCAGTCAGACAAGCAGAAAATCAGGAGATCTTTGAAACGGCAAACCGCCTGCAACAGCGTATTGCCTCCGTCATGCGTTATGCCGTTCAGTCTGGAATTATCAGTTATAACCCCGCGCTCGATACATCTGGTGCAATTACTACGGTAAAAGTTCGTCATCGCCCTGCACTGGCATTATCCCGCATATCAGAGCTGGTTAAACGGATTGATAATTATAGTGGATACCCAATGACACAAGTGGCGGTGATGCTTAACCTGCTTGTATTTACCCGCTCTAGTGAACTGAGGTATGCACGATGGTCCGAAATTGATTTTAAGGGCTCACTCTGGACAATACCTGCGGAACGTATACCGATTCCCAACGTGAGATTTTCCCATCGGGGTGCAAAAATGCGTACACCTCACCTAGTTCCGCTTAGTCATCAGGCGATTACTTTACTCAGAATTCTGTATGACTGGACCGGAGAACATGAACTGATATTAACTGGCGCACATAACCCTCACATTCCCCTCAGTGAGAATACCGTCAATAAAGCCTTACGACTAATGGGATATGACACCAAAACAGATATCTGTGGTCACGGCTTCCGTTCTATGGCCTGCAGCTCGCTAATCGAATCAGGATTATGGTCTAAAGATGCGGTAGAACGGCAAATGAGTCATCAGGAACGTAACGATGTCCGGGCAGCTTATATTCATAAAGCTGAACACCTTGATGAACGGCGACTGATGGTTCAATGGTGGGCTGACTTTATCGATGCCAACAGGCAACAAACTATTTCTCCCTTTGATTATGCCAAGGTGAATAATCCCTTCAGGTAAATACTATTCACCGTAATACATCTTATTCAATAAGTTTCTATAATTAAAAG