Homologs in group_50

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13 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08880 FBDBKF_08880 83.0 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 63.3 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 66.9 Morganella morganii S1 - Integrase
EHELCC_07865 EHELCC_07865 63.3 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 83.0 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 63.3 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 83.0 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 63.3 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 83.0 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 63.3 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 83.0 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 42.5 Morganella psychrotolerans - tyrosine-type recombinase/integrase
F4V73_RS10095 F4V73_RS10095 57.7 Morganella psychrotolerans - tyrosine-type recombinase/integrase

Distribution of the homologs in the orthogroup group_50

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39347 0.0 644 77 1 395 5 intB Putative protein IntB Escherichia coli (strain K12)
P08320 6.1e-179 509 60 2 411 3 int Integrase Enterobacteria phage P4
P32053 5.15e-79 253 35 8 418 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P76542 2.5e-77 248 36 10 413 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P37317 2e-74 240 34 7 401 3 int Integrase Shigella phage Sf6
P37326 8.76e-74 238 34 7 401 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P06155 6.76e-10 64 21 16 438 3 int Integrase Enterobacteria phage phi80

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17290
Feature type CDS
Gene -
Product integrase arm-type DNA-binding domain-containing protein
Location 3798109 - 3799374 (strand: 1)
Length 1266 (nucleotides) / 421 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDISLAEAREKRDAARKLIANGFDPSEKRKEVKEEQQKEFNTFEKVARDWHATNQRWSEGHSHRVLKSLEDNIFVAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQSGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLERIDDYKGRPLTKLAVKLTLLVFIRSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQIYQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSKDAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADYLDASRGGEISPFSFAKISNEIV

Flanking regions ( +/- flanking 50bp)

TGGTATCTCTCGATTCGATAATAGTTTGTACCAACAGAAGGAGATAAATCATGGCTCTTACTGATGCTAAAGTCAGGGCTGCCAAGCCTCTGGATAAATCGTATAAATTGACCGATGGTGATGGTATGCACTTGATGGTACATACCAACGGCTCAAAATATTGGCGTTTACAGTATCGCTTTGGCGGTAAGCAAAAAATGTTAGCGCTGGGTGTTTACCCGGATATTTCACTTGCAGAAGCCAGAGAGAAAAGAGATGCAGCCAGAAAGTTAATAGCGAATGGTTTTGATCCCAGTGAAAAACGGAAAGAAGTGAAAGAAGAGCAACAAAAGGAATTTAATACATTCGAGAAGGTTGCACGTGATTGGCATGCAACTAATCAGCGATGGTCAGAAGGGCATAGCCATCGAGTACTCAAAAGCCTTGAGGACAATATCTTTGTTGCTATTGGTAAACGTAATATTGCTGAACTAAAAACTCGCGATCTACTCGAACCTATTAAAGCCGTAGAGATGTCTGGACGTCTTGAGGTGGCGGCACGTTTACAACAACGTGTAACCGCCATCATGCGCTATGCCGTACAAAGCGGTTTGATCGACTATAACCCAGCGCAAGATATGGCTGGCGCAGTTGCGACAGGCAAACGAGTTCATAGAGCGGCATTAGAGCTTAAACGCCTACCTGAGTTCTTAGAACGCATCGATGATTATAAGGGAAGGCCTTTAACTAAACTTGCAGTCAAACTTACCTTATTAGTCTTTATTCGTTCCAGCGAACTGCGTTTTGCACGTTGGGATGAAATCGATTTTGAAAATGCCATGTGGACGATACCTGCTGAACGAGAAGCGATAGAAGGCGTTAAACACTCTCATCGCGGATCAAAAATGCGCACTACCCATTTAGTTCCTTTAAGCCGACAAGCCATTGAGATCTTAAAACAGATCTATCAATTCAGTGGTAACCACGAACTGATCTTTATCGGCGATCATAATCCTAGAAAGCCAATGAGTGAAAATACGGTAAACAATGCATTACGTGTGATGGGCTATGATACTAAGACGGAAGTGTGTGGTCATGGTTTTAGAACAATGGCGTGTAGTTCGTTGATTGAGTCAGGTTTGTGGTCAAAGGATGCAGTAGAGAGGCAAATGAGCCACCAAGAGCGTAATTCAGTCAGGGCTGCTTATATTCATAAAGCAGAACATATTGAGGAAAGGCGGCTGATGGTGCAATGGTGGGCTGATTATCTGGATGCGAGTAGGGGAGGGGAAATTTCGCCGTTTAGTTTTGCGAAAATAAGTAATGAGATAGTGTGAGGCATGCAGATACAGTTTTACATATATTGCTAAATGCTCATCAAAAGCTG