PF00271

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00271, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 121 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00271
Description Helicase conserved C-terminal domain

Occurence in the database

PF00271 is associated with 121 different proteins (see tab "Protein list" and "Profile")
The 121 proteins are classified into 18 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_235 FBDBKF_01470 292494 293840 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S1
1 group_664 FBDBKF_02365 162564 166535 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S1
2 group_956 FBDBKF_05235 53190 54563 1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S1
3 group_282 FBDBKF_06230 76944 79850 1 rapA RNA polymerase-associated protein RapA Morganella morganii S1
4 group_1311 FBDBKF_08030 138014 140464 1 hrpB ATP-dependent helicase HrpB Morganella morganii S1
5 group_1325 FBDBKF_08205 18067 19362 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S1
6 group_1353 FBDBKF_08385 52577 54403 1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S1
7 group_1410 FBDBKF_08710 122544 124451 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S1
8 group_1477 FBDBKF_09535 4801 6147 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S1
9 group_322 FBDBKF_09600 17382 19394 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S1
10 group_3303 FBDBKF_10270 5642 8074 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S1
11 group_1728 FBDBKF_12060 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S1
12 group_1756 FBDBKF_12230 105292 107493 1 priA primosomal protein N' Morganella morganii S1
13 group_3387 FBDBKF_13190 27210 28787 -1 Helicase Morganella morganii S1
14 group_1949 FBDBKF_14635 23703 27143 1 mfd transcription-repair coupling factor Morganella morganii S1
15 group_388 FBDBKF_14890 78428 80188 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S1
16 group_3458 FBDBKF_15665 67055 69385 -1 DEAD/DEAH box helicase Morganella morganii S1
17 group_3637 FBDBKF_20620 7 2136 1 hypothetical protein Morganella morganii S1
18 group_235 EHELCC_00075 15028 16374 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S2
19 group_664 EHELCC_02835 550384 554355 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S2
20 group_3637 EHELCC_04305 188153 191134 1 DEAD/DEAH box helicase family protein Morganella morganii S2
21 group_1477 EHELCC_04335 196766 198112 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S2
22 group_322 EHELCC_04400 209347 211359 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S2
23 group_3387 EHELCC_08905 246404 247981 1 Helicase Morganella morganii S2
24 group_282 EHELCC_09275 77516 80422 1 rapA RNA polymerase-associated protein RapA Morganella morganii S2
25 group_956 EHELCC_12355 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S2
26 group_1410 EHELCC_12815 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S2
27 group_1353 EHELCC_13140 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S2
28 group_1325 EHELCC_13320 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S2
29 group_1311 EHELCC_13860 112208 114658 1 hrpB ATP-dependent helicase HrpB Morganella morganii S2
30 group_1756 EHELCC_14075 27212 29413 -1 priA primosomal protein N' Morganella morganii S2
31 group_1728 EHELCC_14245 69888 71969 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S2
32 group_3303 EHELCC_14605 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S2
33 group_1949 EHELCC_15440 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S2
34 group_388 EHELCC_15695 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S2
35 group_3458 EHELCC_16020 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S2
36 group_664 NLDBIP_00625 125781 129752 -1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S4
37 group_235 NLDBIP_03385 663762 665108 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S4
38 group_3637 NLDBIP_04305 187949 190930 1 DEAD/DEAH box helicase family protein Morganella morganii S4
39 group_1477 NLDBIP_04335 196562 197908 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S4
40 group_322 NLDBIP_04400 209143 211155 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S4
41 group_3387 NLDBIP_09230 246404 247981 1 Helicase Morganella morganii S4
42 group_282 NLDBIP_09655 77516 80422 1 rapA RNA polymerase-associated protein RapA Morganella morganii S4
43 group_956 NLDBIP_12695 126886 128259 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S4
44 group_1410 NLDBIP_13155 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S4
45 group_1353 NLDBIP_13480 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S4
46 group_1325 NLDBIP_13660 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S4
47 group_1311 NLDBIP_14305 133083 135533 1 hrpB ATP-dependent helicase HrpB Morganella morganii S4
48 group_3303 NLDBIP_14435 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S4
49 group_1756 NLDBIP_15170 31149 33350 -1 priA primosomal protein N' Morganella morganii S4
50 group_1728 NLDBIP_15340 73825 75906 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S4
51 group_1949 NLDBIP_15970 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S4
52 group_388 NLDBIP_16225 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S4
53 group_3458 NLDBIP_16345 11978 14308 1 DEAD/DEAH box helicase Morganella morganii S4
54 group_664 LHKJJB_01410 262933 266904 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S3
55 group_235 LHKJJB_04900 271003 272349 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S3
56 group_3387 LHKJJB_05035 9178 10755 -1 Helicase Morganella morganii S3
57 group_282 LHKJJB_08100 136816 139722 -1 rapA RNA polymerase-associated protein RapA Morganella morganii S3
58 group_1311 LHKJJB_08545 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S3
59 group_3637 LHKJJB_10135 188063 191044 1 DEAD/DEAH box helicase family protein Morganella morganii S3
60 group_956 LHKJJB_12555 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S3
61 group_1325 LHKJJB_12895 16785 18080 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S3
62 group_1353 LHKJJB_13075 51295 53121 1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S3
63 group_1410 LHKJJB_13400 121262 123169 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S3
64 group_322 LHKJJB_14230 124223 126235 1 uvrB excinuclease ABC subunit UvrB Morganella morganii S3
65 group_1477 LHKJJB_14295 137470 138816 1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S3
66 group_3303 LHKJJB_14910 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S3
67 group_1728 LHKJJB_15270 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S3
68 group_1756 LHKJJB_15440 105292 107493 1 priA primosomal protein N' Morganella morganii S3
69 group_388 LHKJJB_15615 6422 8182 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S3
70 group_1949 LHKJJB_15870 59467 62907 -1 mfd transcription-repair coupling factor Morganella morganii S3
71 group_3458 LHKJJB_16455 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S3
72 group_664 HKOGLL_01450 268444 272415 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S5
73 group_235 HKOGLL_02145 15233 16579 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S5
74 group_3387 HKOGLL_05880 230995 232572 1 Helicase Morganella morganii S5
75 group_282 HKOGLL_07650 136816 139722 -1 rapA RNA polymerase-associated protein RapA Morganella morganii S5
76 group_1311 HKOGLL_08095 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S5
77 group_3637 HKOGLL_08840 8 2989 -1 DEAD/DEAH box helicase family protein Morganella morganii S5
78 group_956 HKOGLL_11170 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S5
79 group_1410 HKOGLL_11630 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S5
80 group_1353 HKOGLL_11955 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S5
81 group_1325 HKOGLL_12135 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S5
82 group_1477 HKOGLL_12240 5582 6928 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S5
83 group_322 HKOGLL_12305 18163 20175 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S5
84 group_3303 HKOGLL_13530 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S5
85 group_1728 HKOGLL_14390 49399 51480 1 recG ATP-dependent DNA helicase RecG Morganella morganii S5
86 group_1756 HKOGLL_14560 91955 94156 1 priA primosomal protein N' Morganella morganii S5
87 group_388 HKOGLL_14735 5634 7394 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S5
88 group_1949 HKOGLL_14990 58679 62119 -1 mfd transcription-repair coupling factor Morganella morganii S5
89 group_3458 HKOGLL_16225 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S5
90 group_322 F4V73_RS00740 154226 156241 1 uvrB excinuclease ABC subunit UvrB Morganella psychrotolerans
91 group_1477 F4V73_RS00830 171998 173353 1 rhlE ATP-dependent RNA helicase RhlE Morganella psychrotolerans
92 group_235 F4V73_RS01935 422802 424154 -1 srmB ATP-dependent RNA helicase SrmB Morganella psychrotolerans
93 group_664 F4V73_RS04745 1001257 1005150 1 hrpA ATP-dependent RNA helicase HrpA Morganella psychrotolerans
94 group_956 F4V73_RS05690 1209555 1210928 1 dbpA ATP-dependent RNA helicase DbpA Morganella psychrotolerans
95 group_1949 F4V73_RS07430 1552073 1555513 1 mfd transcription-repair coupling factor Morganella psychrotolerans
96 group_388 F4V73_RS07690 1607984 1609744 1 DEAD/DEAH box helicase Morganella psychrotolerans
97 group_1353 F4V73_RS09585 17320 19146 1 recQ ATP-dependent DNA helicase RecQ Morganella psychrotolerans
98 group_1410 F4V73_RS09925 89727 91724 1 DEAD/DEAH family ATP-dependent RNA helicase Morganella psychrotolerans
99 group_1311 F4V73_RS12960 203262 205712 -1 hrpB ATP-dependent helicase HrpB Morganella psychrotolerans
100 group_1728 F4V73_RS14585 149565 151646 -1 recG ATP-dependent DNA helicase RecG Morganella psychrotolerans
101 group_282 F4V73_RS15685 134365 137271 -1 rapA RNA polymerase-associated protein RapA Morganella psychrotolerans
102 group_1756 F4V73_RS17060 38792 40993 1 priA primosomal protein N' Morganella psychrotolerans
103 group_322 F4V73_RS18290 96901 98547 1 DEAD/DEAH box helicase Morganella psychrotolerans
104 group_1325 F4V73_RS18755 19221 20516 -1 rhlB ATP-dependent RNA helicase RhlB Morganella psychrotolerans
105 group_956 PMI_RS00530 136845 138218 1 dbpA ATP-dependent RNA helicase DbpA Proteus mirabilis HI4320
106 group_1311 PMI_RS00975 237537 239966 1 hrpB ATP-dependent helicase HrpB Proteus mirabilis HI4320
107 group_322 PMI_RS02990 659167 661176 1 uvrB excinuclease ABC subunit UvrB Proteus mirabilis HI4320
108 group_1477 PMI_RS03055 673134 674531 1 rhlE ATP-dependent RNA helicase RhlE Proteus mirabilis HI4320
109 group_388 PMI_RS04060 908621 910384 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320
110 group_1949 PMI_RS04305 965251 968706 -1 mfd transcription-repair coupling factor Proteus mirabilis HI4320
111 group_664 PMI_RS05750 1252744 1256640 1 hrpA ATP-dependent RNA helicase HrpA Proteus mirabilis HI4320
112 group_235 PMI_RS09360 2042522 2043877 1 srmB ATP-dependent RNA helicase SrmB Proteus mirabilis HI4320
113 group_282 PMI_RS11515 2537417 2540320 1 rapA RNA polymerase-associated protein RapA Proteus mirabilis HI4320
114 group_235 PMI_RS12250 2707018 2713440 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320
115 group_282 PMI_RS12260 2718606 2721491 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320
116 group_1728 PMI_RS14165 3143801 3145888 1 recG ATP-dependent DNA helicase RecG Proteus mirabilis HI4320
117 group_1756 PMI_RS15920 3533192 3535393 -1 priA primosomal protein N' Proteus mirabilis HI4320
118 group_1325 PMI_RS16465 3631136 3632434 -1 rhlB ATP-dependent RNA helicase RhlB Proteus mirabilis HI4320
119 group_1353 PMI_RS16640 3667239 3669068 1 recQ ATP-dependent DNA helicase RecQ Proteus mirabilis HI4320
120 group_1410 PMI_RS17055 3753090 3754925 1 DEAD/DEAH family ATP-dependent RNA helicase Proteus mirabilis HI4320