Orthogroup:group_293


Homologs in group_293

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09600 FBDBKF_09600 Morganella morganii S1 uvrB excinuclease ABC subunit UvrB
EHELCC_04400 EHELCC_04400 Morganella morganii S2 uvrB excinuclease ABC subunit UvrB
NLDBIP_04400 NLDBIP_04400 Morganella morganii S4 uvrB excinuclease ABC subunit UvrB
LHKJJB_14230 LHKJJB_14230 Morganella morganii S3 uvrB excinuclease ABC subunit UvrB
HKOGLL_12305 HKOGLL_12305 Morganella morganii S5 uvrB excinuclease ABC subunit UvrB
F4V73_RS00740 F4V73_RS00740 Morganella psychrotolerans uvrB excinuclease ABC subunit UvrB
F4V73_RS18290 F4V73_RS18290 Morganella psychrotolerans - DEAD/DEAH box helicase
PMI_RS02990 PMI_RS02990 Proteus mirabilis HI4320 uvrB excinuclease ABC subunit UvrB

Distribution of group_293 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_293 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_293

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_293.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 uvrB 7
2 - 1

Product

# Product Occurence
1 excinuclease ABC subunit UvrB 7
2 DEAD/DEAH box helicase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0556 7 L Replication, recombination and repair (L) Excinuclease UvrABC helicase subunit UvrB
COG1061 1 KL Transcription (K)
Replication, recombination and repair (L)		 Superfamily II DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03702 7 excinuclease ABC subunit B Nucleotide excision repair -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00271 8 Helicase conserved C-terminal domain
PF02151 7 UvrB/uvrC motif
PF04851 8 Type III restriction enzyme, res subunit
PF12344 7 Ultra-violet resistance protein B
PF17757 7 UvrB interaction domain

Annotations of the 550 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase MPH1 1
ATP-dependent DNA helicase RecG 1
ATP-dependent DNA helicase homolog RECG, chloroplastic 1
ATP-dependent DNA helicase mph1 1
ATP-dependent DNA helicase uvsW 1
ATP-dependent RNA helicase CshA 1
ATP-dependent RNA helicase DBP1 1
ATP-dependent RNA helicase DBP10 2
ATP-dependent RNA helicase DBP2 7
ATP-dependent RNA helicase DBP2-A 2
ATP-dependent RNA helicase DBP3 7
ATP-dependent RNA helicase DBP5 7
ATP-dependent RNA helicase DDX42 5
ATP-dependent RNA helicase DED1 3
ATP-dependent RNA helicase RhlB 18
ATP-dependent RNA helicase bel 1
ATP-dependent RNA helicase dbp-3 1
ATP-dependent RNA helicase dbp2 7
ATP-dependent RNA helicase dbp3 4
ATP-dependent RNA helicase dbp5 1
ATP-dependent RNA helicase eIF4A 1
ATP-dependent RNA helicase p62 1
DEAD-box ATP-dependent RNA helicase 3, chloroplastic 2
DEAD-box ATP-dependent RNA helicase 3B, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 52C 1
DEAD-box ATP-dependent RNA helicase 9 1
DEAD-box ATP-dependent RNA helicase CshA 23
DNA 3'-5' helicase/translocase StoXPB1 1
DNA 3'-5' translocase XPB2 1
Endoribonuclease Dcr-1 1
Eukaryotic initiation factor 4A 3
Eukaryotic initiation factor 4A-III 11
Eukaryotic initiation factor 4A-III-A 1
Eukaryotic initiation factor 4A-III-B 1
Fanconi anemia group M protein homolog 1
General transcription and DNA repair factor IIH helicase/translocase subunit XPB 9
Nucleolar RNA helicase 2 3
Nucleolar RNA helicase 2-A 1
Nucleolar RNA helicase 2-B 1
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 1
Pre-mRNA-splicing ATP-dependent RNA helicase prp28 1
Primosomal protein N' 2
Probable ATP-dependent RNA helicase DDX17 2
Probable ATP-dependent RNA helicase DDX4 1
Probable ATP-dependent RNA helicase ddx20 1
Putative ATP-dependent helicase IRC3 1
Putative DNA 3'-5' helicase Rad25 2
Putative helicase 22 1
Putative mitochondrial ATP-dependent helicase irc3 1
Transcription-repair-coupling factor 24
UvrABC system protein B 377

Protein length

Min length 548
Max length 671
Mean length (sd) 654.8 (43.1)
Median length 670.0

Protein length distribution