Orthogroup:group_1525



Homologs in group_1525

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09850 FBDBKF_09850 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_04650 EHELCC_04650 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_04650 NLDBIP_04650 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_13980 LHKJJB_13980 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_12555 HKOGLL_12555 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS00495 F4V73_RS00495 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS02770 PMI_RS02770 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_1525 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1525 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1525

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1525.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 7 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02311 7 AraC-like ligand binding domain
PF12833 7 Helix-turn-helix domain

Annotations of the 63 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 22
HTH-type transcriptional regulator NimR 1
HTH-type transcriptional regulator RipA 3
HTH-type transcriptional regulator VqsM 1
Msm operon regulatory protein 1
Regulatory protein SoxS 4
Thermoregulatory protein LcrF 1
Transcriptional regulatory protein HptR 9
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized response regulatory protein SERP2406 1
Uncharacterized response regulatory protein SE_0165 1
Virulence regulon transcriptional activator VirF 2

Protein length

Min length 253
Max length 254
Mean length (sd) 253.9 (0.4)
Median length 254.0

Protein length distribution