Orthogroup:group_1025


Homologs in group_1025

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05770 FBDBKF_05770 Morganella morganii S1 ribE riboflavin synthase subunit alpha
EHELCC_11820 EHELCC_11820 Morganella morganii S2 ribE riboflavin synthase subunit alpha
NLDBIP_12160 NLDBIP_12160 Morganella morganii S4 ribE riboflavin synthase subunit alpha
LHKJJB_12020 LHKJJB_12020 Morganella morganii S3 ribE riboflavin synthase subunit alpha
HKOGLL_10635 HKOGLL_10635 Morganella morganii S5 ribE riboflavin synthase subunit alpha
F4V73_RS03555 F4V73_RS03555 Morganella psychrotolerans - riboflavin synthase
PMI_RS06775 PMI_RS06775 Proteus mirabilis HI4320 - riboflavin synthase

Distribution of group_1025 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1025 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1025

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1025.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ribE 5
2 - 2

Product

# Product Occurence
1 riboflavin synthase subunit alpha 5
2 riboflavin synthase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0307 7 H Coenzyme transport and metabolism (H) Riboflavin synthase alpha chain

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00677 7 Lumazine binding domain

Annotations of the 26 SwissProt hits

Annotation Number of occurrences
Blue fluorescence protein 1
Lumazine protein 2
Riboflavin synthase 22
Yellow fluorescent protein 1

Protein length

Min length 218
Max length 221
Mean length (sd) 220.3 (1.3)
Median length 221.0

Protein length distribution