Orthogroup:group_2022


Homologs in group_2022

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15175 FBDBKF_15175 Morganella morganii S1 ugpQ Glycerophosphoryl diester phosphodiesterase
EHELCC_11070 EHELCC_11070 Morganella morganii S2 ugpQ Glycerophosphoryl diester phosphodiesterase
NLDBIP_11415 NLDBIP_11415 Morganella morganii S4 ugpQ Glycerophosphoryl diester phosphodiesterase
LHKJJB_11275 LHKJJB_11275 Morganella morganii S3 ugpQ Glycerophosphoryl diester phosphodiesterase
HKOGLL_09885 HKOGLL_09885 Morganella morganii S5 ugpQ Glycerophosphoryl diester phosphodiesterase
F4V73_RS12270 F4V73_RS12270 Morganella psychrotolerans - glycerophosphodiester phosphodiesterase family protein
PMI_RS01730 PMI_RS01730 Proteus mirabilis HI4320 - glycerophosphodiester phosphodiesterase family protein

Distribution of group_2022 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2022 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2022

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2022.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ugpQ 5
2 - 2

Product

# Product Occurence
1 Glycerophosphoryl diester phosphodiesterase 5
2 glycerophosphodiester phosphodiesterase family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0584 7 I Lipid transport and metabolism (I) Glycerophosphoryl diester phosphodiesterase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03009 7 Glycerophosphoryl diester phosphodiesterase family

Annotations of the 23 SwissProt hits

Annotation Number of occurrences
Glycerophosphodiester phosphodiesterase 3
Glycerophosphodiester phosphodiesterase 1 4
Glycerophosphodiester phosphodiesterase domain-containing protein 4 2
Glycerophosphodiester phosphodiesterase, cytoplasmic 1
Lysophospholipase D GDPD1 3
Lysophospholipase D GDPD3 1
Phosphatidylglycerol phospholipase C 1
Probable glycerophosphodiester phosphodiesterase 1 2
Putative glycerophosphodiester phosphodiesterase YhdW 1
Uncharacterized protein MG385 1
Uncharacterized protein MG385 homolog 1
Uncharacterized protein MT2337 1
Uncharacterized protein Rv2277c 1
Uncharacterized protein YqiK 1

Protein length

Min length 269
Max length 290
Mean length (sd) 282.0 (6.3)
Median length 283.0

Protein length distribution