Orthogroup:group_257


Homologs in group_257

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04140 FBDBKF_04140 Morganella morganii S1 gcvT glycine cleavage system aminomethyltransferase GcvT
EHELCC_05430 EHELCC_05430 Morganella morganii S2 gcvT glycine cleavage system aminomethyltransferase GcvT
NLDBIP_05750 NLDBIP_05750 Morganella morganii S4 gcvT glycine cleavage system aminomethyltransferase GcvT
LHKJJB_02630 LHKJJB_02630 Morganella morganii S3 gcvT glycine cleavage system aminomethyltransferase GcvT
HKOGLL_06105 HKOGLL_06105 Morganella morganii S5 gcvT glycine cleavage system aminomethyltransferase GcvT
F4V73_RS08585 F4V73_RS08585 Morganella psychrotolerans gcvT glycine cleavage system aminomethyltransferase GcvT
PMI_RS09965 PMI_RS09965 Proteus mirabilis HI4320 gcvT glycine cleavage system aminomethyltransferase GcvT
PMI_RS14380 PMI_RS14380 Proteus mirabilis HI4320 - aminomethyltransferase family protein

Distribution of group_257 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_257 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_257

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_257.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 gcvT 7
2 - 1

Product

# Product Occurence
1 glycine cleavage system aminomethyltransferase GcvT 7
2 aminomethyltransferase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0404 8 E Amino acid transport and metabolism (E) Glycine cleavage system protein T (aminomethyltransferase)

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01571 8 Aminomethyltransferase folate-binding domain
PF08669 7 Glycine cleavage T-protein C-terminal barrel domain

Annotations of the 353 SwissProt hits

Annotation Number of occurrences
4-methylaminobutanoate oxidase (formaldehyde-forming) 1
Aminomethyltransferase 308
Aminomethyltransferase, mitochondrial 14
Dimethylglycine dehydrogenase, mitochondrial 3
Dimethylglycine oxidase 1
Dimethylsulfoniopropionate demethylase DmdA 2
Probable aminomethyltransferase 11
Probable aminomethyltransferase, mitochondrial 1
Putative transferase At1g60990, chloroplastic 1
Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial 3
Sarcosine dehydrogenase, mitochondrial 3
Sarcosine oxidase subunit alpha 4
Trimethylamine-oxide aldolase 1

Protein length

Min length 364
Max length 382
Mean length (sd) 366.2 (6.4)
Median length 364.0

Protein length distribution