Homologs in group_3458

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15665 FBDBKF_15665 100.0 Morganella morganii S1 - DEAD/DEAH box helicase
EHELCC_16020 EHELCC_16020 100.0 Morganella morganii S2 - DEAD/DEAH box helicase
LHKJJB_16455 LHKJJB_16455 100.0 Morganella morganii S3 - DEAD/DEAH box helicase
HKOGLL_16225 HKOGLL_16225 100.0 Morganella morganii S5 - DEAD/DEAH box helicase

Distribution of the homologs in the orthogroup group_3458

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3458

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q07736 5.45e-138 430 35 25 828 1 hsdR Type I restriction enzyme EcoAI endonuclease subunit Escherichia coli
Q47281 4.1e-130 409 34 27 840 3 hsdR Type I restriction enzyme EcoEI endonuclease subunit Escherichia coli
P08956 1.65e-40 164 26 25 638 1 hsdR Type I restriction enzyme EcoKI endonuclease subunit Escherichia coli (strain K12)
Q06683 7.27e-22 104 26 14 413 1 IRC3 Putative ATP-dependent helicase IRC3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q1MTR1 1.36e-14 81 26 15 393 3 irc3 Putative mitochondrial ATP-dependent helicase irc3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q4A127 3.13e-13 77 25 8 274 3 hsdR Type I restriction enzyme SsaAORF53P endonuclease subunit Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P33919 4.95e-12 73 22 14 429 1 radD Putative DNA repair helicase RadD Escherichia coli (strain K12)
Q8NYL9 2.54e-10 67 26 8 273 3 hsdR Type I restriction enzyme SauMW2ORF169P endonuclease subunit Staphylococcus aureus (strain MW2)
Q6GCT1 2.54e-10 67 26 8 273 3 hsdR Type I restriction enzyme SauMSSORF170P endonuclease subunit Staphylococcus aureus (strain MSSA476)
Q7A801 2.67e-10 67 26 8 273 1 hsdR Type I restriction enzyme SauN315I endonuclease subunit Staphylococcus aureus (strain N315)
Q99X26 2.67e-10 67 26 8 273 3 hsdR Type I restriction enzyme SauMu50ORF195P endonuclease subunit Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GKB1 2.72e-10 67 26 8 273 3 hsdR Type I restriction enzyme SauMRSORF196P endonuclease subunit Staphylococcus aureus (strain MRSA252)
Q5HJH8 4.82e-10 67 26 8 273 3 hsdR Type I restriction enzyme SauCOLORF180P endonuclease subunit Staphylococcus aureus (strain COL)
Q5HK76 8.37e-09 63 24 7 271 3 hsdR Type I restriction enzyme SepRPIP endonuclease subunit Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O05052 5.27e-07 57 27 8 233 3 hsdR Type I restriction enzyme HindI endonuclease subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0C8H1 1.5e-06 55 23 6 230 3 Mal-048 Probable helicase A859L African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
P20703 0.000182 48 22 17 393 1 uvsW ATP-dependent DNA helicase uvsW Enterobacteria phage T4
Q6FPQ3 0.00027 48 29 9 164 3 MPH1 ATP-dependent DNA helicase MPH1 Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q9VDA0 0.000367 48 25 9 185 1 Fancm DEAD-box ATP-dependent DNA helicase Fancm Drosophila melanogaster
A6ZVS0 0.000642 47 31 9 161 3 MPH1 ATP-dependent DNA helicase MPH1 Saccharomyces cerevisiae (strain YJM789)
Q6CQX2 0.000775 47 30 8 160 3 MPH1 ATP-dependent DNA helicase MPH1 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16345
Feature type CDS
Gene -
Product DEAD/DEAH box helicase
Location 11978 - 14308 (strand: 1)
Length 2331 (nucleotides) / 776 (amino acids)

Contig

Accession ZDB_533
Length 80662 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3458
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF00271 Helicase conserved C-terminal domain
PF04851 Type III restriction enzyme, res subunit
PF08463 EcoEI R protein C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4096 Defense mechanisms (V) V Type I site-specific restriction endonuclease, part of a restriction-modification system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] - -

Protein Sequence

MSSEADTRANYIDPALKAAHWQPSNIIREHYFTDGRKLAGGVRGRRCFVDYLLHKDNRYLAVVEAKKESEYPTKGLQQAIDYAKKLLVRFVYSSNGKQTYEFDLETGKGDYIEFYPTPQELENRYAGVNSDLGQQLRNVPFHLEGSMQPRYYQELAVHAATDAIGKGKPRVLLTLATGTGKTFIAFQIVHKLFQSRWNKESPGTRRPRILFLADRNILADQAINTFNPYEKDLIKINGEEVRKRNGVVPTNAHIFFAIYQAIADRTDREKENIEGYYKSYPTDFFDLVMIDECHRGSANDTGSWRAILDHFGSAVHIGLTATPKREDNIDTYDYFGQPAFEYSLKAGINDGFLTPYRVKRVRTNLDELVLTKDDQVIEGESGQDVYQVEDYDKKIIVDERTELVAKAILDNINPLEKTIVFCENQNHALTMRDMINKHKKVKDPHYCVRVTSDEGKVGRELLEKFQDNDKDIPTIITSSQMLTTGVDARNVRNVVLDRTVGSMVEFKQIVGRGTRVFDGKDYFTIVDFRGATNKFYDKDWDGEPEAPEPGGIGEPTPPPYTPEPPGGTDGPEPEPGEPKPRLKVKLGKHRELKVIDVETRYIDENGKPLTVQEFVERLITQLPGLFRSVEELRQIWSDPDERETLLGKLVQAGFDKEQLATLRRMFEAEECDIFDLLAFLAFEQPMATRKARADQVRTNSAFFKQYQHEKAQQFLHFVLNRYEQTGSTELSRECLPALIELSGLGTIKDASTAFGGKPAYLLAAFKQLQQQLYHVN

Flanking regions ( +/- flanking 50bp)

AAAAAGTGCCAAGCGATAGCCAACGCTAAAAAGCATCAAGGAGTGATGACATGTCGTCAGAAGCAGATACCAGAGCAAACTACATTGACCCAGCGTTAAAAGCTGCACATTGGCAACCGAGCAACATTATTCGGGAGCATTACTTTACCGATGGACGTAAGCTTGCCGGTGGTGTCCGTGGGCGTCGCTGTTTTGTTGATTATCTACTTCATAAAGACAACCGTTATCTTGCGGTTGTAGAAGCAAAAAAAGAATCTGAGTATCCAACCAAAGGCCTTCAACAAGCCATCGACTATGCCAAGAAGCTACTCGTTCGCTTTGTTTATTCAAGTAACGGCAAACAAACCTATGAGTTCGATTTAGAAACCGGTAAAGGTGACTACATCGAGTTTTACCCAACGCCACAAGAATTAGAAAACCGCTACGCGGGTGTTAATTCAGATCTAGGCCAGCAACTTCGTAATGTGCCTTTCCATCTAGAAGGCTCTATGCAGCCGCGTTATTACCAAGAATTAGCGGTCCATGCAGCGACAGATGCTATTGGTAAAGGTAAGCCACGAGTGTTGTTAACGCTGGCTACTGGTACAGGTAAAACATTTATTGCCTTCCAAATCGTCCATAAACTGTTTCAGTCCCGTTGGAACAAAGAATCTCCGGGTACACGTAGGCCTCGAATCTTGTTTTTAGCTGATCGCAATATTTTGGCAGATCAAGCTATCAATACATTTAATCCGTACGAAAAAGATCTTATTAAAATTAATGGGGAGGAGGTTCGAAAGCGTAATGGTGTTGTGCCTACGAATGCTCATATCTTTTTTGCAATTTATCAAGCTATCGCAGATCGAACGGATAGAGAAAAAGAAAATATTGAAGGGTATTACAAGTCTTATCCAACCGACTTTTTTGATTTAGTAATGATTGATGAGTGTCACCGAGGTAGCGCCAATGACACTGGTTCATGGCGTGCAATTCTGGACCACTTTGGAAGTGCTGTTCACATTGGTTTAACTGCTACACCCAAACGAGAAGATAATATTGATACTTATGATTATTTTGGACAACCAGCTTTTGAATATTCTTTAAAAGCAGGCATTAATGATGGCTTCTTAACGCCATACCGTGTCAAACGGGTGCGCACCAACTTAGACGAGCTAGTGCTAACCAAAGATGACCAAGTGATCGAAGGCGAATCAGGGCAAGACGTCTATCAGGTAGAAGATTACGACAAGAAGATCATTGTTGATGAACGTACCGAGCTGGTCGCAAAAGCCATTTTGGACAATATCAATCCACTAGAGAAAACCATCGTCTTTTGCGAAAACCAAAATCATGCTCTCACCATGCGTGACATGATCAATAAACATAAAAAAGTTAAAGACCCACACTACTGCGTTCGTGTAACCAGTGACGAAGGTAAAGTTGGCCGCGAGCTACTGGAAAAATTCCAAGATAACGACAAAGACATTCCCACTATCATTACCTCATCGCAAATGTTAACCACCGGGGTAGATGCCCGCAATGTGCGTAACGTAGTGTTGGATAGAACCGTCGGCTCAATGGTGGAGTTTAAACAAATAGTCGGTCGCGGTACCCGTGTTTTTGATGGAAAAGACTATTTCACCATCGTCGATTTTCGCGGTGCAACCAATAAGTTTTACGACAAAGATTGGGATGGCGAACCTGAAGCACCAGAGCCAGGTGGCATTGGCGAGCCAACACCACCACCTTACACACCAGAACCACCTGGAGGAACAGATGGCCCAGAACCTGAGCCGGGTGAGCCAAAACCTCGGTTGAAAGTAAAACTAGGCAAACACCGTGAACTGAAAGTCATTGATGTAGAAACCCGTTATATTGATGAAAACGGCAAACCTCTCACGGTGCAAGAATTTGTTGAGCGTTTGATCACTCAATTACCAGGTTTGTTTAGATCGGTTGAGGAACTGCGGCAGATATGGTCAGACCCTGACGAGCGCGAAACCTTGCTCGGTAAACTTGTACAAGCAGGTTTTGATAAAGAGCAACTCGCTACACTACGACGCATGTTTGAAGCAGAAGAGTGCGATATCTTTGATCTGCTGGCTTTTTTAGCCTTTGAACAACCCATGGCAACCCGTAAAGCTCGCGCAGATCAAGTTCGAACTAACAGCGCCTTCTTTAAACAATATCAGCACGAAAAGGCACAGCAGTTTTTGCACTTTGTGCTCAATCGTTATGAGCAAACTGGCAGCACGGAGTTATCACGCGAGTGTTTGCCTGCACTTATCGAGCTATCAGGGTTGGGCACAATAAAAGACGCCTCAACTGCATTCGGTGGAAAGCCAGCCTATTTACTGGCTGCTTTTAAACAATTACAACAACAGCTATACCACGTGAACTAAAATGCAATTAACCCTAGCACCTAACCCGCTACACGATCAGCCGCAAACCC