Homologs in group_282

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_09275 EHELCC_09275 100.0 Morganella morganii S2 rapA RNA polymerase-associated protein RapA
NLDBIP_09655 NLDBIP_09655 100.0 Morganella morganii S4 rapA RNA polymerase-associated protein RapA
LHKJJB_08100 LHKJJB_08100 100.0 Morganella morganii S3 rapA RNA polymerase-associated protein RapA
HKOGLL_07650 HKOGLL_07650 100.0 Morganella morganii S5 rapA RNA polymerase-associated protein RapA
F4V73_RS15685 F4V73_RS15685 93.3 Morganella psychrotolerans rapA RNA polymerase-associated protein RapA
PMI_RS11515 PMI_RS11515 81.1 Proteus mirabilis HI4320 rapA RNA polymerase-associated protein RapA
PMI_RS12260 PMI_RS12260 26.5 Proteus mirabilis HI4320 - DEAD/DEAH box helicase

Distribution of the homologs in the orthogroup group_282

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_282

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4F2H6 0.0 1631 80 1 968 3 rapA RNA polymerase-associated protein RapA Proteus mirabilis (strain HI4320)
Q7N8V1 0.0 1623 79 1 970 3 rapA RNA polymerase-associated protein RapA Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A1JJG0 0.0 1582 78 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8G9P6 0.0 1579 78 0 968 3 rapA RNA polymerase-associated protein RapA Serratia proteamaculans (strain 568)
B1JKV7 0.0 1576 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EN4 0.0 1576 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K4B3 0.0 1576 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FM96 0.0 1576 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQB3 0.0 1575 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pestis (strain Pestoides F)
Q1CMQ6 0.0 1575 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pestis bv. Antiqua (strain Nepal516)
A9R154 0.0 1575 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pestis bv. Antiqua (strain Angola)
Q8ZII0 0.0 1575 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pestis
Q1C1Y2 0.0 1575 77 0 968 3 rapA RNA polymerase-associated protein RapA Yersinia pestis bv. Antiqua (strain Antiqua)
A7MIC1 0.0 1566 77 0 968 3 rapA RNA polymerase-associated protein RapA Cronobacter sakazakii (strain ATCC BAA-894)
A6T4J7 0.0 1555 76 0 968 3 rapA RNA polymerase-associated protein RapA Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A1A7A6 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O1:K1 / APEC
B1LFZ3 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain SMS-3-5 / SECEC)
Q8FL92 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TLT1 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7NHG5 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7UIA5 0.0 1553 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B7M0F4 0.0 1552 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O8 (strain IAI1)
A7ZHF0 0.0 1552 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O139:H28 (strain E24377A / ETEC)
Q3Z5V2 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella sonnei (strain Ss046)
B2VGQ6 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q1RGE0 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain UTI89 / UPEC)
B6HZ39 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain SE11)
B7N7T3 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P60240 0.0 1551 75 0 968 1 rapA RNA polymerase-associated protein RapA Escherichia coli (strain K12)
B1IRB9 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
C4ZPY3 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain K12 / MC4100 / BW2952)
P60241 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O157:H7
B7L4I0 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli (strain 55989 / EAEC)
B7MAI2 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O45:K1 (strain S88 / ExPEC)
Q7UDT5 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella flexneri
Q0T8D8 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella flexneri serotype 5b (strain 8401)
A7ZW09 0.0 1551 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O9:H4 (strain HS)
B5Y1Y4 0.0 1550 76 0 968 3 rapA RNA polymerase-associated protein RapA Klebsiella pneumoniae (strain 342)
B7LVT0 0.0 1549 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B2U265 0.0 1548 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q326H6 0.0 1548 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella boydii serotype 4 (strain Sb227)
B7MNR6 0.0 1547 75 0 968 3 rapA RNA polymerase-associated protein RapA Escherichia coli O81 (strain ED1a)
Q32K36 0.0 1547 75 0 968 3 rapA RNA polymerase-associated protein RapA Shigella dysenteriae serotype 1 (strain Sd197)
A4W6G3 0.0 1544 75 0 968 3 rapA RNA polymerase-associated protein RapA Enterobacter sp. (strain 638)
C6DEY0 0.0 1543 76 1 968 3 rapA RNA polymerase-associated protein RapA Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B4TWU3 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella schwarzengrund (strain CVM19633)
A9MYN1 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B5R1T4 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella enteritidis PT4 (strain P125109)
B5FI41 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella dublin (strain CT_02021853)
B5F778 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella agona (strain SL483)
Q57TG4 0.0 1538 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella choleraesuis (strain SC-B67)
A8ALP3 0.0 1537 74 0 968 3 rapA RNA polymerase-associated protein RapA Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q8ZRV8 0.0 1536 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
C0Q5F4 0.0 1536 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella paratyphi C (strain RKS4594)
Q8Z9J4 0.0 1536 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella typhi
B4SU17 0.0 1536 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella newport (strain SL254)
A9MQF6 0.0 1536 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5BL33 0.0 1534 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella paratyphi A (strain AKU_12601)
Q5PDF0 0.0 1534 74 0 968 3 rapA RNA polymerase-associated protein RapA Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q6D0E6 0.0 1531 76 1 968 3 rapA RNA polymerase-associated protein RapA Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q2NVX0 0.0 1452 72 0 968 3 rapA RNA polymerase-associated protein RapA Sodalis glossinidius (strain morsitans)
B5FGE9 0.0 1288 63 2 969 3 rapA RNA polymerase-associated protein RapA Aliivibrio fischeri (strain MJ11)
Q6LV34 0.0 1278 62 4 974 3 rapA RNA polymerase-associated protein RapA Photobacterium profundum (strain SS9)
Q8DCG1 0.0 1276 62 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio vulnificus (strain CMCP6)
Q7MHE6 0.0 1274 62 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio vulnificus (strain YJ016)
B6EPV7 0.0 1272 63 2 969 3 rapA RNA polymerase-associated protein RapA Aliivibrio salmonicida (strain LFI1238)
Q87LD0 0.0 1268 62 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
C3LR47 0.0 1267 61 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio cholerae serotype O1 (strain M66-2)
Q9KP70 0.0 1267 61 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VIC2 0.0 1267 61 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio atlanticus (strain LGP32)
A5F5C5 0.0 1267 61 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q5E881 0.0 1266 64 2 941 3 rapA RNA polymerase-associated protein RapA Aliivibrio fischeri (strain ATCC 700601 / ES114)
A7MSB2 0.0 1246 61 2 969 3 rapA RNA polymerase-associated protein RapA Vibrio campbellii (strain ATCC BAA-1116)
A0KGL5 0.0 1154 58 6 969 3 rapA RNA polymerase-associated protein RapA Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A6WSX5 0.0 1148 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella baltica (strain OS185)
A3D001 0.0 1148 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella baltica (strain OS155 / ATCC BAA-1091)
A9L3Y2 0.0 1147 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella baltica (strain OS195)
B8ECC6 0.0 1147 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella baltica (strain OS223)
A4YAN1 0.0 1147 56 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A1RFP5 0.0 1144 56 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella sp. (strain W3-18-1)
Q0HR19 0.0 1142 56 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella sp. (strain MR-7)
A0KSP4 0.0 1142 56 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella sp. (strain ANA-3)
Q07XC8 0.0 1141 55 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella frigidimarina (strain NCIMB 400)
A4SR75 0.0 1141 58 12 975 3 rapA RNA polymerase-associated protein RapA Aeromonas salmonicida (strain A449)
Q0HMR2 0.0 1140 55 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella sp. (strain MR-4)
A8FQW4 0.0 1140 55 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella sediminis (strain HAW-EB3)
Q9CK01 0.0 1139 57 5 970 3 rapA RNA polymerase-associated protein RapA Pasteurella multocida (strain Pm70)
A1SAC7 0.0 1136 56 6 971 3 rapA RNA polymerase-associated protein RapA Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q8EJ93 0.0 1133 55 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A8H8X8 0.0 1132 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
B0TVM8 0.0 1131 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella halifaxensis (strain HAW-EB4)
B1KJA5 0.0 1127 55 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella woodyi (strain ATCC 51908 / MS32)
Q12RU8 0.0 1126 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
B8CIB4 0.0 1125 55 4 970 3 rapA RNA polymerase-associated protein RapA Shewanella piezotolerans (strain WP3 / JCM 13877)
A3QA31 0.0 1121 54 6 973 3 rapA RNA polymerase-associated protein RapA Shewanella loihica (strain ATCC BAA-1088 / PV-4)
B3H0F9 0.0 1112 55 6 972 3 rapA RNA polymerase-associated protein RapA Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3MZ32 0.0 1110 55 6 972 3 rapA RNA polymerase-associated protein RapA Actinobacillus pleuropneumoniae serotype 5b (strain L20)
A6VQU2 0.0 1101 56 6 970 3 rapA RNA polymerase-associated protein RapA Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
B0BT63 0.0 1100 55 7 972 3 rapA RNA polymerase-associated protein RapA Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
Q7VKV0 0.0 1087 55 6 975 3 rapA RNA polymerase-associated protein RapA Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0I5G1 0.0 1049 54 6 970 3 rapA RNA polymerase-associated protein RapA Histophilus somni (strain 129Pt)
B0URM0 0.0 1043 54 6 970 3 rapA RNA polymerase-associated protein RapA Histophilus somni (strain 2336)
Q4QMI0 0.0 1008 51 5 971 3 rapA RNA polymerase-associated protein RapA Haemophilus influenzae (strain 86-028NP)
P44781 0.0 1003 51 5 971 3 rapA RNA polymerase-associated protein RapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UAT0 0.0 999 51 5 971 3 rapA RNA polymerase-associated protein RapA Haemophilus influenzae (strain PittEE)
B7V6T4 0.0 943 51 7 969 3 rapA RNA polymerase-associated protein RapA Pseudomonas aeruginosa (strain LESB58)
Q9HYT6 0.0 942 51 7 969 3 rapA RNA polymerase-associated protein RapA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q1IDS5 0.0 935 51 14 973 3 rapA RNA polymerase-associated protein RapA Pseudomonas entomophila (strain L48)
A4VNR4 0.0 934 51 7 965 3 rapA RNA polymerase-associated protein RapA Stutzerimonas stutzeri (strain A1501)
Q3KGV8 0.0 934 50 8 966 3 rapA RNA polymerase-associated protein RapA Pseudomonas fluorescens (strain Pf0-1)
Q4ZPQ0 0.0 931 50 8 965 3 rapA RNA polymerase-associated protein RapA Pseudomonas syringae pv. syringae (strain B728a)
C3K902 0.0 930 50 8 966 3 rapA RNA polymerase-associated protein RapA Pseudomonas fluorescens (strain SBW25)
B1J1F5 0.0 928 50 14 973 3 rapA RNA polymerase-associated protein RapA Pseudomonas putida (strain W619)
Q4KH47 0.0 928 50 8 967 3 rapA RNA polymerase-associated protein RapA Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q87XS2 0.0 927 50 8 965 3 rapA RNA polymerase-associated protein RapA Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
B0KU95 0.0 925 50 12 971 3 rapA RNA polymerase-associated protein RapA Pseudomonas putida (strain GB-1)
Q88NR0 0.0 924 50 12 971 3 rapA RNA polymerase-associated protein RapA Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q48LP5 0.0 924 50 8 965 3 rapA RNA polymerase-associated protein RapA Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
A5VZN0 0.0 923 50 12 971 3 rapA RNA polymerase-associated protein RapA Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
P54509 2.17e-21 103 32 6 210 3 yqhH Uncharacterized ATP-dependent helicase YqhH Bacillus subtilis (strain 168)
P54509 4.76e-15 83 33 2 136 3 yqhH Uncharacterized ATP-dependent helicase YqhH Bacillus subtilis (strain 168)
P41410 4.87e-11 70 24 23 514 1 rhp54 DNA repair protein rhp54 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
B3MMA5 2.87e-09 64 23 20 517 3 okr DNA repair and recombination protein RAD54-like Drosophila ananassae
Q0PCS3 5.55e-09 63 22 19 509 1 CHR25 Protein CHROMATIN REMODELING 25 Arabidopsis thaliana
B4MX21 6.43e-09 63 22 20 520 3 okr DNA repair and recombination protein RAD54-like Drosophila willistoni
B4M9A8 3.52e-08 61 21 20 492 3 okr DNA repair and recombination protein RAD54-like Drosophila virilis
O12944 7.21e-08 60 21 20 518 2 RAD54L DNA repair and recombination protein RAD54-like (Fragment) Gallus gallus
B4JCS7 1.33e-07 59 22 23 514 3 okr DNA repair and recombination protein RAD54-like Drosophila grimshawi
B4KHL5 1.55e-07 59 22 19 492 3 okr DNA repair and recombination protein RAD54-like Drosophila mojavensis
Q9XFH4 2.21e-07 58 23 16 476 1 DDM1 ATP-dependent DNA helicase DDM1 Arabidopsis thaliana
B4NXB8 2.31e-07 58 22 18 492 3 okr DNA repair and recombination protein RAD54-like Drosophila yakuba
A4PBL4 2.66e-07 58 24 4 180 1 RAD54 DNA repair and recombination protein RAD54 Oryza sativa subsp. japonica
O76460 2.68e-07 58 22 19 495 1 okr DNA repair and recombination protein RAD54-like Drosophila melanogaster
F4IV99 2.87e-07 58 31 9 186 1 CHR5 Protein CHROMATIN REMODELING 5 Arabidopsis thaliana
Q10332 2.98e-07 58 32 2 112 1 SPBC582.10c Uncharacterized ATP-dependent helicase C582.10c Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O13762 4.94e-07 57 22 3 180 3 SPAC17A2.12 Uncharacterized ATP-dependent helicase C17A2.12 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
B3NAN8 5.03e-07 57 22 18 492 3 okr DNA repair and recombination protein RAD54-like Drosophila erecta
Q29KH2 5.66e-07 57 23 19 493 3 okr DNA repair and recombination protein RAD54-like Drosophila pseudoobscura pseudoobscura
P87114 1.22e-06 56 22 15 488 3 fft1 ATP-dependent helicase fft1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8TDI0 1.24e-06 56 25 19 472 1 CHD5 Chromodomain-helicase-DNA-binding protein 5 Homo sapiens
P70270 2.54e-06 55 21 16 514 1 Rad54l DNA repair and recombination protein RAD54-like Mus musculus
Q9NRZ9 2.6e-06 55 20 14 488 1 HELLS Lymphoid-specific helicase Homo sapiens
Q12873 2.67e-06 55 24 19 471 1 CHD3 Chromodomain-helicase-DNA-binding protein 3 Homo sapiens
Q6PGB8 2.71e-06 55 28 7 175 1 Smarca1 Probable global transcription activator SNF2L1 Mus musculus
D3ZD32 3.02e-06 55 24 17 471 1 Chd5 Chromodomain-helicase-DNA-binding protein 5 Rattus norvegicus
P28370 3.14e-06 55 28 7 175 1 SMARCA1 Probable global transcription activator SNF2L1 Homo sapiens
Q8TD26 3.18e-06 55 25 4 186 1 CHD6 Chromodomain-helicase-DNA-binding protein 6 Homo sapiens
A2A8L1 3.45e-06 55 24 17 471 1 Chd5 Chromodomain-helicase-DNA-binding protein 5 Mus musculus
D3ZA12 3.86e-06 55 25 4 186 1 Chd6 Chromodomain-helicase-DNA-binding protein 6 Rattus norvegicus
P38144 3.92e-06 54 26 9 207 1 ISW1 ISWI chromatin-remodeling complex ATPase ISW1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9P2D1 4.45e-06 54 25 4 186 1 CHD7 Chromodomain-helicase-DNA-binding protein 7 Homo sapiens
A2AJK6 4.61e-06 54 25 4 186 1 Chd7 Chromodomain-helicase-DNA-binding protein 7 Mus musculus
Q06A37 4.77e-06 54 25 4 186 2 CHD7 Chromodomain-helicase-DNA-binding protein 7 Gallus gallus
A3KFM7 5.41e-06 54 25 4 186 1 Chd6 Chromodomain-helicase-DNA-binding protein 6 Mus musculus
O16102 8.24e-06 53 27 7 195 1 Chd3 Chromodomain-helicase-DNA-binding protein 3 Drosophila melanogaster
Q60848 8.44e-06 53 24 5 177 1 Hells Lymphocyte-specific helicase Mus musculus
O97159 9.88e-06 53 27 8 235 1 Mi-2 Chromodomain-helicase-DNA-binding protein Mi-2 homolog Drosophila melanogaster
B0R0I6 1.05e-05 53 26 5 186 3 chd8 Chromodomain-helicase-DNA-binding protein 8 Danio rerio
Q14839 1.08e-05 53 25 9 235 1 CHD4 Chromodomain-helicase-DNA-binding protein 4 Homo sapiens
B4GS98 1.25e-05 53 23 19 493 3 okr DNA repair and recombination protein RAD54-like Drosophila persimilis
Q6PDQ2 1.29e-05 53 25 9 235 1 Chd4 Chromodomain-helicase-DNA-binding protein 4 Mus musculus
Q9FLB0 1.55e-05 52 27 3 140 2 RH18 DEAD-box ATP-dependent RNA helicase 18 Arabidopsis thaliana
Q08773 1.99e-05 52 30 7 175 1 ISW2 ISWI chromatin-remodeling complex ATPase ISW2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O42861 2.19e-05 52 21 17 488 1 fft3 ATP-dependent helicase fft3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A5AA68 2.21e-05 52 26 4 149 3 dbp8 ATP-dependent RNA helicase dbp8 Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
C0H4W3 2.48e-05 52 27 8 170 1 PF08_0048 Probable ATP-dependent helicase PF08_0048 Plasmodium falciparum (isolate 3D7)
Q4WXW1 3.13e-05 51 26 5 150 3 dbp8 ATP-dependent RNA helicase dbp8 Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
Q8MNV7 3.32e-05 51 28 7 176 3 smrc-1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 homolog Caenorhabditis elegans
Q92698 3.95e-05 51 21 17 511 1 RAD54L DNA repair and recombination protein RAD54-like Homo sapiens
F1Q8K0 4.07e-05 51 21 19 488 1 rad54l DNA repair and recombination protein RAD54-like Danio rerio
Q8GXD6 4.12e-05 51 28 3 128 2 RH49 DEAD-box ATP-dependent RNA helicase 49 Arabidopsis thaliana
Q3B7N1 4.56e-05 51 30 12 218 2 CHD1L Chromodomain-helicase-DNA-binding protein 1-like Bos taurus
O60177 4.99e-05 51 29 0 102 3 SPBC23E6.02 Uncharacterized ATP-dependent helicase C23E6.02 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q94BR5 5.04e-05 51 31 0 85 1 CHR28 Helicase-like transcription factor CHR28 Arabidopsis thaliana
P32657 5.11e-05 51 25 7 194 1 CHD1 Chromo domain-containing protein 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q2UKX3 7.3e-05 50 26 5 151 3 dbp8 ATP-dependent RNA helicase dbp8 Aspergillus oryzae (strain ATCC 42149 / RIB 40)
A1CKJ0 7.56e-05 50 26 5 150 3 dbp8 ATP-dependent RNA helicase dbp8 Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107)
Q5A310 8.12e-05 50 23 22 470 2 ISW2 ISWI chromatin-remodeling complex ATPase ISW2 Candida albicans (strain SC5314 / ATCC MYA-2876)
Q86WJ1 8.13e-05 50 30 12 218 1 CHD1L Chromodomain-helicase-DNA-binding protein 1-like Homo sapiens
O60264 8.32e-05 50 26 7 175 1 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 Homo sapiens
Q4I662 9.12e-05 50 26 6 149 3 DBP8 ATP-dependent RNA helicase DBP8 Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q9LHE4 9.44e-05 50 28 0 116 1 CHR27 Helicase-like transcription factor CHR27 Arabidopsis thaliana
Q8GUG7 0.000111 50 26 2 119 2 RH50 DEAD-box ATP-dependent RNA helicase 50 Arabidopsis thaliana
P34580 0.000118 49 25 2 110 3 T26G10.1 Putative ATP-dependent RNA helicase T26G10.1 Caenorhabditis elegans
A1D6X9 0.000151 49 26 5 150 3 dbp8 ATP-dependent RNA helicase dbp8 Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
A6SFV4 0.000175 49 25 6 152 3 dbp8 ATP-dependent RNA helicase dbp8 Botryotinia fuckeliana (strain B05.10)
O94421 0.00019 49 23 21 472 1 snf22 SWI/SNF chromatin-remodeling complex subunit snf22 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q60EX7 0.000191 49 29 6 190 1 CHR719 Probable ATP-dependent DNA helicase CHR719 Oryza sativa subsp. japonica
Q5FWF4 0.000206 49 25 7 193 1 ZRANB3 DNA annealing helicase and endonuclease ZRANB3 Homo sapiens
Q22516 0.000212 49 28 10 221 2 chd-3 Chromodomain-helicase-DNA-binding protein 3 homolog Caenorhabditis elegans
Q4P328 0.000237 49 30 9 175 3 SWR1 Helicase SWR1 Ustilago maydis (strain 521 / FGSC 9021)
Q91ZW3 0.000238 48 26 7 175 1 Smarca5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 Mus musculus
A7E436 0.000239 48 26 6 152 3 dbp8 ATP-dependent RNA helicase dbp8 Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Q9LK10 0.000261 48 30 4 136 1 CLSY4 SNF2 domain-containing protein CLASSY 4 Arabidopsis thaliana
P41877 0.000294 48 25 7 179 1 isw-1 Chromatin-remodeling complex ATPase chain isw-1 Caenorhabditis elegans
F4IV45 0.000297 48 25 8 220 3 CHR10 Probable helicase CHR10 Arabidopsis thaliana
A2BGR3 0.000302 48 26 5 161 1 ercc6l DNA excision repair protein ERCC-6-like Danio rerio
A7TJI3 0.000307 48 26 8 200 3 INO80 Chromatin-remodeling ATPase INO80 Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17)
Q7G8Y3 0.000311 48 24 3 170 2 Os01g0367900 Probable chromatin-remodeling complex ATPase chain Oryza sativa subsp. japonica
B9XXL6 0.000328 48 27 2 114 1 rhpA DEAD-box ATP-dependent RNA helicase RhpA Helicobacter pylori (strain B128)
O74842 0.00036 48 28 8 193 1 fft2 ATP-dependent helicase fft2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
E1BB03 0.000363 48 23 6 209 3 ZRANB3 DNA annealing helicase and endonuclease ZRANB3 Bos taurus
Q58083 0.000431 47 28 4 142 1 MJ0669 Probable ATP-dependent RNA helicase MJ0669 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9C8J1 0.000434 47 27 4 132 2 RH34 DEAD-box ATP-dependent RNA helicase 34 Arabidopsis thaliana
Q24368 0.000437 48 28 7 176 1 Iswi Chromatin-remodeling complex ATPase chain Iswi Drosophila melanogaster
Q9ZUL5 0.000463 47 26 7 200 1 ETL1 Protein CHROMATIN REMODELING 19 Arabidopsis thaliana
P43610 0.00047 48 25 6 177 1 IRC5 Uncharacterized ATP-dependent helicase IRC5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P31244 0.000527 47 24 1 141 1 RAD16 DNA repair protein RAD16 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
F4K128 0.00053 47 27 6 176 2 CHR23 Probable ATP-dependent DNA helicase CHR23 Arabidopsis thaliana
Q872I5 0.000534 48 26 9 194 3 crf2-1 Chromatin-remodeling ATPase INO80 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
F4JTF6 0.000552 47 26 7 177 3 CHR7 CHD3-type chromatin-remodeling factor CHR7 Arabidopsis thaliana
Q9P793 0.000567 47 26 11 238 1 mit1 Chromatin remodeling factor mit1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A5E0U9 0.000722 47 31 3 104 3 DBP8 ATP-dependent RNA helicase DBP8 Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
A5DQS0 0.000818 47 29 2 115 3 DED1 ATP-dependent RNA helicase DED1 Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
O25029 0.000831 47 26 2 114 1 rhpA DEAD-box ATP-dependent RNA helicase RhpA Helicobacter pylori (strain ATCC 700392 / 26695)
Q95216 0.000843 47 24 3 160 1 HLTF Helicase-like transcription factor Oryctolagus cuniculus
F4J9M5 0.000866 47 27 5 184 2 CHR12 Probable ATP-dependent DNA helicase CHR12 Arabidopsis thaliana
Q8RWY3 0.001 47 27 6 172 1 CHR11 ISWI chromatin-remodeling complex ATPase CHR11 Arabidopsis thaliana
B2ZFP3 0.001 47 26 9 193 2 smarcal1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 Danio rerio

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_06230
Feature type CDS
Gene rapA
Product RNA polymerase-associated protein RapA
Location 76944 - 79850 (strand: 1)
Length 2907 (nucleotides) / 968 (amino acids)

Contig

Accession contig_6
Length 178871 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_282
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00176 SNF2-related domain
PF00271 Helicase conserved C-terminal domain
PF12137 RNA polymerase recycling family C-terminal
PF18337 RapA N-terminal Tudor like domain
PF18339 RapA N-terminal Tudor like domain 1

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0553 Transcription (K)
Replication, recombination and repair (L)		 KL Superfamily II DNA or RNA helicase, SNF2 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03580 ATP-dependent helicase HepA [EC:5.6.2.-] - -

Protein Sequence

MPFTLGQRWISDTESELGLGTVVSVDARMITLLFPATGENRLYAAADAPITRVMFNEGDTVTSHEGWQLSVTAVEESDGLLTYTGQRTDTGEENVRLREVFLDSKLTFNKPQDRLFAGQIDRMDRFALRYRARKFLSEEYRRATSGLRGIRASLIPHQLFIANEVGKRHAPRVLLADEVGLGKTIEAGMIIHQQLMAGRAERVLIIVPESLQYQWLVEMLRRFNLRFSLFDDSRYTEAQHESDNPFETEQLVLCSLDFVRKSKPRFEHLAEAGWDMLVVDEAHHLVWSEEAPSREYQVIETLAESIPSVLLLTATPEQLGMESHFARLRLLDPNRFHDFETFVAEQQKYQPVADAVTLLLDRAPLTKDQQNAIHDLIAEQDIEPLLKAANTDSEDGENARRELISMLMDRHGTSRLLFRNTRNGVKGFPRRELKAIKMPLPAQYQTAIKVAGIMGSKKTTEIKAREMLYPEQIYQEFEGENATWWNFDPRVEWLLGFLLANRNEKVLVICAQAATALQLEQVLREREGIHAAVFHENMSLLERDRAAAYFASEEEGAQVLLCSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIQISIPYLENTAQAVLLRWFHEGLEAFEYTCPTGRTIYDRYYDRLINLMANPADLSGFDEFIAECRKTHDVLKQQLEQGRDRLLEMHSNGGEAGNELAAEIADQDEDTELVTFALNLFDIVGINQDDRSDNMIALTPSDHMLVPDFPGLPEDGCTITFKREQALSREDTQFISWEHPIIRNGLDLVLSGDTGSCAVSVLKNKALPVGTLLTELIYVVEAQAPKNLQLTRFLPPTPVRLLMDVKGNNLASQVEFESFNRQLNAVNRHTGSKFVNAVQNEVHQVLRLSEDVVAGQARELITAAKAMADQHLTLEHDRLLALKSVNPNIRDDELDAIEEERQQILSHLDDANWRLDAIRLIVVSHQ

Flanking regions ( +/- flanking 50bp)

TCCACAGCATTTTTCTAATTAGCCCTGAATAACAGAATCGAGCCAAAAATATGCCGTTTACTCTTGGTCAACGCTGGATAAGCGATACTGAAAGCGAGCTGGGATTAGGTACAGTTGTATCTGTCGACGCCCGGATGATCACCCTTCTTTTCCCTGCCACCGGTGAAAACCGTCTCTATGCCGCAGCCGATGCCCCTATCACCCGTGTGATGTTCAACGAAGGGGATACCGTTACCAGTCACGAAGGCTGGCAGCTCAGTGTGACCGCCGTTGAAGAGAGCGACGGATTATTAACCTATACCGGGCAGCGTACCGATACCGGTGAGGAAAATGTCCGCCTGCGCGAAGTGTTTCTCGACAGTAAACTGACATTTAATAAACCTCAGGATCGCCTGTTTGCCGGTCAGATTGACCGTATGGATCGCTTTGCGCTGCGCTACCGTGCCCGCAAATTCCTGAGTGAAGAGTACCGCCGCGCCACCAGCGGCCTGCGCGGCATCCGCGCCAGCCTGATCCCGCATCAGCTGTTTATCGCCAATGAAGTCGGTAAACGCCACGCGCCGCGTGTTCTGCTGGCGGACGAAGTGGGCCTGGGTAAAACCATTGAAGCCGGGATGATTATCCACCAGCAGTTAATGGCCGGACGCGCCGAGCGTGTGCTGATTATCGTACCGGAAAGCCTTCAGTACCAATGGCTGGTGGAAATGCTGCGCCGTTTCAATCTGCGGTTTTCTCTGTTCGATGACAGCCGCTACACCGAAGCACAGCACGAGAGTGACAACCCGTTTGAGACCGAACAGCTGGTATTATGCTCGCTGGATTTTGTCCGCAAGAGCAAGCCGCGTTTTGAACACCTGGCTGAAGCCGGCTGGGATATGCTGGTGGTGGATGAAGCACACCATCTGGTCTGGAGCGAAGAAGCGCCAAGCCGTGAGTATCAGGTGATTGAAACCCTGGCAGAAAGCATTCCGTCTGTACTCCTGCTGACCGCCACTCCGGAACAGCTGGGCATGGAGAGCCACTTTGCGCGTCTGCGCCTGCTGGACCCGAACCGTTTCCATGATTTCGAAACCTTTGTTGCCGAACAGCAAAAATATCAGCCGGTTGCCGATGCGGTCACTCTGCTGCTCGACCGCGCACCGCTGACCAAAGATCAGCAAAATGCCATTCATGACCTGATCGCCGAACAGGATATTGAGCCGCTGCTGAAAGCCGCCAATACCGACAGTGAAGACGGCGAAAATGCCCGTCGCGAGCTTATCAGCATGCTGATGGACAGACACGGCACCAGCCGCCTGCTGTTCCGCAACACCCGCAACGGTGTGAAAGGCTTCCCGCGCCGCGAACTGAAAGCGATTAAGATGCCGCTGCCGGCACAGTATCAGACCGCGATTAAAGTCGCCGGGATCATGGGCAGCAAAAAAACCACTGAAATCAAAGCCCGTGAAATGCTCTATCCGGAGCAGATTTATCAGGAATTTGAAGGCGAAAACGCCACCTGGTGGAACTTCGATCCGCGTGTTGAATGGCTGCTCGGCTTCCTGCTGGCAAACCGCAATGAAAAAGTGCTGGTAATTTGTGCCCAGGCCGCAACCGCTCTGCAGCTGGAGCAGGTTCTGCGCGAGCGCGAAGGCATCCACGCTGCGGTTTTCCATGAGAATATGTCCCTGCTGGAACGCGACCGGGCGGCGGCCTACTTTGCCTCCGAAGAGGAAGGCGCACAGGTGCTGCTCTGCTCTGAAATCGGTTCTGAAGGGCGTAACTTCCAGTTTGCCAATCAGCTGGTGATGTTCGATCTGCCGTTTAACCCGGATCTGCTGGAGCAGCGTATCGGGCGCCTCGACCGTATCGGTCAGAAACGCGATATTCAGATCAGTATTCCGTATCTGGAAAATACCGCACAGGCCGTACTGCTGCGCTGGTTCCACGAAGGTCTGGAAGCCTTTGAATATACCTGTCCGACCGGCCGCACCATCTATGACCGCTATTACGACAGACTGATTAACCTGATGGCAAACCCGGCGGATCTCAGTGGTTTTGATGAATTTATCGCGGAATGCCGGAAGACTCATGATGTCCTGAAACAACAGCTGGAACAGGGCCGTGACCGCCTTCTGGAAATGCATTCCAACGGCGGCGAAGCCGGTAATGAGCTGGCCGCTGAAATTGCGGATCAGGATGAAGATACCGAACTGGTCACCTTTGCCCTGAATCTGTTTGATATTGTCGGCATCAATCAGGATGACCGCAGCGATAACATGATAGCCCTGACTCCGTCTGACCACATGCTGGTGCCGGATTTTCCGGGTCTGCCGGAAGACGGCTGCACCATCACCTTTAAGCGTGAACAGGCATTGTCCCGCGAAGACACACAGTTTATCAGCTGGGAACACCCGATTATCCGCAACGGTCTGGATCTGGTCCTGTCCGGTGATACCGGCAGCTGTGCGGTCTCCGTGCTGAAAAACAAAGCCCTGCCGGTCGGCACACTGCTGACAGAGCTGATTTATGTGGTGGAAGCACAGGCTCCGAAGAATCTGCAGCTGACCCGCTTCCTGCCGCCGACACCGGTGCGTCTGCTGATGGATGTGAAAGGCAATAATCTGGCATCTCAGGTGGAGTTTGAAAGCTTTAACCGCCAGCTGAATGCCGTAAACCGCCATACCGGCAGTAAGTTTGTCAATGCGGTGCAAAATGAGGTGCATCAGGTGCTGCGTCTGTCCGAAGACGTTGTTGCCGGTCAGGCCCGTGAGCTGATTACCGCAGCGAAAGCAATGGCTGATCAGCACCTTACTCTGGAACACGACCGCCTGCTGGCACTGAAGTCGGTTAACCCGAACATCCGTGATGACGAGCTTGATGCCATTGAAGAAGAACGTCAGCAAATCCTGTCACATCTGGATGATGCCAACTGGCGCCTGGATGCTATCCGGCTGATTGTCGTTTCGCATCAGTAACCTGTATCCCGGCAGAGAATGTCTGCCGGGTCTCTGATTTGGTGATCCCA