Homologs in group_3303

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_14605 EHELCC_14605 100.0 Morganella morganii S2 hsdR Type I restriction enzyme EcoEI endonuclease subunit
NLDBIP_14435 NLDBIP_14435 100.0 Morganella morganii S4 hsdR Type I restriction enzyme EcoEI endonuclease subunit
LHKJJB_14910 LHKJJB_14910 100.0 Morganella morganii S3 hsdR Type I restriction enzyme EcoEI endonuclease subunit
HKOGLL_13530 HKOGLL_13530 100.0 Morganella morganii S5 hsdR Type I restriction enzyme EcoEI endonuclease subunit

Distribution of the homologs in the orthogroup group_3303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47281 0.0 1512 91 2 814 3 hsdR Type I restriction enzyme EcoEI endonuclease subunit Escherichia coli
Q07736 0.0 1295 77 6 815 1 hsdR Type I restriction enzyme EcoAI endonuclease subunit Escherichia coli
P08956 3.25e-36 151 30 16 431 1 hsdR Type I restriction enzyme EcoKI endonuclease subunit Escherichia coli (strain K12)
Q4A127 1.75e-12 75 26 9 259 3 hsdR Type I restriction enzyme SsaAORF53P endonuclease subunit Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P33919 6.29e-12 72 23 19 419 1 radD Putative DNA repair helicase RadD Escherichia coli (strain K12)
Q5HJH8 1.99e-10 68 27 5 202 3 hsdR Type I restriction enzyme SauCOLORF180P endonuclease subunit Staphylococcus aureus (strain COL)
Q5HK76 2.33e-10 68 28 7 207 3 hsdR Type I restriction enzyme SepRPIP endonuclease subunit Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q6GKB1 5.01e-10 67 27 5 206 3 hsdR Type I restriction enzyme SauMRSORF196P endonuclease subunit Staphylococcus aureus (strain MRSA252)
Q7A801 5.28e-10 67 27 5 206 1 hsdR Type I restriction enzyme SauN315I endonuclease subunit Staphylococcus aureus (strain N315)
Q99X26 5.28e-10 67 27 5 206 3 hsdR Type I restriction enzyme SauMu50ORF195P endonuclease subunit Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NYL9 5.32e-10 67 27 5 206 3 hsdR Type I restriction enzyme SauMW2ORF169P endonuclease subunit Staphylococcus aureus (strain MW2)
Q6GCT1 5.32e-10 67 27 5 206 3 hsdR Type I restriction enzyme SauMSSORF170P endonuclease subunit Staphylococcus aureus (strain MSSA476)
Q06683 3.18e-09 64 23 15 418 1 IRC3 Putative ATP-dependent helicase IRC3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P0C8H1 4.4e-09 63 23 15 433 3 Mal-048 Probable helicase A859L African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
Q65143 9.17e-09 62 23 16 437 3 Ba71V-040 Probable helicase A859L African swine fever virus (strain Badajoz 1971 Vero-adapted)
P0C8H0 1.11e-08 62 23 15 433 3 Ken-052 Probable helicase A859L African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
Q1MTR1 2.64e-08 61 22 13 379 3 irc3 Putative mitochondrial ATP-dependent helicase irc3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P0C8H2 1.69e-06 55 22 16 437 3 Pret-052 Probable helicase A859L African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
P0C8H3 1.97e-06 55 22 16 437 3 War-050 Probable helicase A859L African swine fever virus (isolate Warthog/Namibia/Wart80/1980)
Q9BYX4 0.000209 48 25 6 162 1 IFIH1 Interferon-induced helicase C domain-containing protein 1 Homo sapiens
Q58900 0.000252 48 26 8 219 3 MJ1505 Putative ATP-dependent RNA helicase MJ1505 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_10270
Feature type CDS
Gene hsdR
Product Type I restriction enzyme EcoEI endonuclease subunit
Location 5642 - 8074 (strand: 1)
Length 2433 (nucleotides) / 810 (amino acids)

Contig

Accession contig_12
Length 141735 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3303
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF00271 Helicase conserved C-terminal domain
PF04313 Type I restriction enzyme R protein N terminus (HSDR_N)
PF04851 Type III restriction enzyme, res subunit
PF08463 EcoEI R protein C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4096 Defense mechanisms (V) V Type I site-specific restriction endonuclease, part of a restriction-modification system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] - -

Protein Sequence

MAGVNKTNMSETDIISKFILPAVKDAGWDDLTQIRQEVKLRDGKIVVRGKLASRIKVKSADIVLYHKPNLPLAVIEAKANKHAISKGMQQGLDYAGLLDVPFVFASNGDGFIFHDKTNPQQLESEITLDAFPAPELLWQKYCDWKGFTQQQLPVISQDYYDDGSGKSPRYYQMRAINRTIDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKARNKKRILFLADRNILVDQTKNNDFQPFGTAMTKVTGRTIDPAYEVHLALYQAITGPEENQKAYKQVAPDFFDLIVIDECHRGSASEDSAWREILEYFGSATQIGLTATPKETEDVSNIDYFGEPVYTYSLKEGIEDGFLAPYKVVRVDIDVDVQGWRPVKGQLDKYGKEIEDRIYNLKDFDRTLVIDERTMLVAKTITDYLKRTNPMDKTIVFCNDIDHAERMRHALVVLNPDQVLKNEKYVMKITGDDDIGKAQLDNFINPKKPYPVIATTSELMSTGVDAQTCKLVVLDQNIQSITKFKQIIGRGTRINEKYGKLWFTILDFKKATELFADERFDGVPEKVLVVRPSDISDQDSDFNEQLDAENDDNTAGEAREDTADYQVNRDRSEGCGEFHSDDDDDKVRKFYVNGVHVKVLAKRVQYYDSDGKLVTESFRDYTRKTMLKDSEYASLDGFMRKWKNAPRKQVIIEELEQLGILWGVLAEEVGKDLDPFDLLCHVVYGQPPLTRQERAANVRKRNYFTKYAEPAQQVLNTLLDKYADEGVQEIEDVLVLKLKPFDALGRPGEIIRAGFGNKAAYEQAVNELENEIYRLPPRLA

Flanking regions ( +/- flanking 50bp)

ACTAATTTGTGTAGAATCAGAGCTAACCCACTTTCATGGAGCGCTCTGCTATGGCTGGTGTAAACAAAACGAATATGAGTGAAACGGATATTATCAGCAAATTTATCCTTCCCGCAGTTAAGGATGCCGGCTGGGATGATTTGACTCAGATTCGTCAGGAAGTGAAACTGCGTGATGGTAAGATAGTGGTCCGCGGAAAGCTGGCATCACGTATCAAAGTGAAATCTGCCGATATCGTACTGTATCACAAGCCTAACCTGCCATTGGCGGTTATCGAAGCCAAAGCCAATAAGCACGCCATCAGTAAAGGGATGCAGCAGGGACTGGATTATGCCGGACTGCTTGATGTACCCTTTGTGTTTGCTTCTAACGGTGATGGGTTTATCTTCCATGATAAAACCAATCCGCAGCAGCTCGAATCAGAAATTACGCTTGATGCTTTCCCGGCACCAGAGCTGCTCTGGCAAAAATATTGCGACTGGAAAGGGTTTACTCAGCAACAGTTGCCCGTTATCAGTCAGGATTATTACGATGACGGCAGCGGGAAATCGCCCCGTTACTATCAGATGCGGGCAATTAACCGGACGATAGATGCCGTATCAGCGGGAAAGAATCGTATTTTGCTGGTTATGGCAACCGGCACGGGCAAAACCTATACCGCGTTCCAGATAATCTGGCGGCTGTGGAAAGCCAGAAACAAGAAACGTATTCTGTTTCTTGCAGACCGCAACATTCTGGTCGATCAGACTAAAAATAATGATTTTCAACCTTTCGGCACTGCGATGACCAAAGTCACCGGCCGTACTATCGATCCTGCTTATGAAGTACATCTTGCATTGTATCAGGCCATTACCGGACCGGAAGAGAATCAGAAAGCCTATAAACAGGTTGCTCCGGATTTCTTTGACCTGATTGTGATTGACGAATGTCACCGTGGCAGTGCGTCCGAAGATTCCGCCTGGCGGGAGATTCTGGAGTATTTCGGCAGCGCCACTCAGATTGGCCTGACAGCAACACCAAAAGAAACAGAAGACGTCTCCAATATCGATTATTTTGGTGAACCGGTTTACACCTATTCACTGAAAGAGGGAATTGAAGACGGTTTCCTCGCCCCTTACAAAGTCGTGCGTGTTGATATCGATGTCGATGTTCAGGGCTGGCGGCCGGTTAAAGGTCAGTTGGATAAATACGGCAAAGAGATTGAAGACCGTATATACAATCTGAAGGATTTTGACCGCACGCTGGTTATTGATGAGCGTACTATGCTGGTGGCGAAGACTATCACCGATTACCTGAAACGTACCAACCCGATGGATAAAACCATTGTTTTCTGTAACGATATTGATCATGCAGAGCGGATGCGTCATGCGCTGGTGGTGCTTAATCCTGATCAGGTATTGAAGAACGAAAAATACGTGATGAAAATTACCGGTGACGATGATATCGGCAAAGCACAGCTGGATAACTTTATTAATCCGAAAAAGCCTTATCCGGTGATAGCAACCACCTCAGAATTGATGAGTACGGGCGTCGATGCGCAGACCTGCAAGCTGGTCGTGCTGGATCAAAATATTCAGTCCATAACCAAATTTAAGCAAATCATCGGGCGCGGTACGCGTATCAACGAAAAGTACGGTAAGTTGTGGTTCACCATTCTCGACTTTAAAAAAGCAACCGAACTGTTTGCGGATGAGCGCTTTGACGGCGTGCCGGAAAAAGTGCTGGTGGTCAGACCCAGTGACATTTCCGATCAGGATTCGGATTTTAACGAGCAACTTGATGCGGAAAATGATGATAATACCGCCGGTGAAGCGCGGGAAGATACCGCTGACTATCAGGTTAACCGCGACAGGTCTGAAGGCTGTGGTGAATTCCATAGTGACGATGATGACGACAAAGTCCGTAAGTTCTATGTGAATGGCGTGCATGTAAAAGTGCTGGCTAAACGTGTTCAGTATTATGATTCTGACGGTAAACTGGTGACTGAATCCTTCCGTGATTACACCCGCAAAACAATGCTGAAAGACAGTGAGTACGCTTCACTGGATGGCTTTATGCGTAAATGGAAGAATGCTCCGCGCAAACAGGTCATCATTGAAGAACTGGAGCAACTGGGGATTTTATGGGGTGTACTGGCCGAAGAGGTGGGTAAAGATCTCGACCCGTTTGATTTGCTCTGCCATGTGGTGTACGGTCAGCCGCCGTTAACGCGTCAGGAGCGTGCAGCAAATGTGCGCAAACGTAACTATTTTACGAAGTATGCCGAACCGGCTCAGCAGGTACTTAATACTCTGCTGGACAAATATGCTGATGAAGGTGTGCAGGAAATTGAGGACGTTCTGGTGCTCAAACTGAAACCGTTTGATGCGCTGGGCCGTCCGGGAGAGATCATCAGAGCCGGCTTTGGTAACAAAGCAGCGTATGAGCAGGCCGTCAACGAACTGGAAAACGAAATCTACCGGTTACCGCCACGATTAGCCTGACAGCGAATAAATATATTGCCACCGCCGCGCCTGTGGCCGGTGGCTGTCTT