PF00158

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00158
Protein list: lists the 70 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00158
Description Sigma-54 interaction domain

Occurence in the database

PF00158 is associated with 70 different proteins
The 70 proteins are classified into 10 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_611 FBDBKF_01185 220931 222271 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S1
1 group_2559 FBDBKF_02315 150962 152485 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S1
2 group_2613 FBDBKF_02925 278648 280261 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S1
3 group_855 FBDBKF_03640 130988 132595 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
4 group_1065 FBDBKF_05580 123824 125410 -1 tyrR transcriptional regulator TyrR Morganella morganii S1
5 group_1072 FBDBKF_05615 129917 130903 1 pspF phage shock protein operon transcriptional activator Morganella morganii S1
6 group_2791 FBDBKF_07775 75987 77837 1 AAA domain-containing protein Morganella morganii S1
7 group_3281 FBDBKF_08860 152510 154096 -1 rtcR RNA repair transcriptional activator RtcR Morganella morganii S1
8 group_68 FBDBKF_10590 79116 80501 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S1
9 group_2871 FBDBKF_10630 89303 90949 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
10 group_68 FBDBKF_12110 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S1
11 group_611 EHELCC_00360 86597 87937 1 qseF two-component system response regulator QseF/GlrR Morganella morganii S2
12 group_2559 EHELCC_02785 538782 540305 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S2
13 group_2613 EHELCC_03395 666468 668081 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S2
14 group_855 EHELCC_06895 114508 116115 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
15 group_1072 EHELCC_11975 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S2
16 group_1065 EHELCC_12010 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S2
17 group_3281 EHELCC_12665 9629 11215 1 rtcR RNA repair transcriptional activator RtcR Morganella morganii S2
18 group_2791 EHELCC_13605 50181 52031 1 AAA domain-containing protein Morganella morganii S2
19 group_68 EHELCC_14195 56194 57648 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S2
20 group_68 EHELCC_14925 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S2
21 group_2871 EHELCC_14965 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
22 group_2613 NLDBIP_00065 12055 13668 1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S4
23 group_2559 NLDBIP_00675 139831 141354 1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S4
24 group_611 NLDBIP_03100 592199 593539 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S4
25 group_855 NLDBIP_07220 114381 115988 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
26 group_1072 NLDBIP_12315 50546 51532 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S4
27 group_1065 NLDBIP_12350 56039 57625 1 tyrR transcriptional regulator TyrR Morganella morganii S4
28 group_3281 NLDBIP_13005 9629 11215 1 rtcR RNA repair transcriptional activator RtcR Morganella morganii S4
29 group_2791 NLDBIP_14050 71056 72906 1 AAA domain-containing protein Morganella morganii S4
30 group_68 NLDBIP_14755 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S4
31 group_2871 NLDBIP_14795 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
32 group_68 NLDBIP_15290 60131 61585 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S4
33 group_2559 LHKJJB_01360 251331 252854 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S3
34 group_2613 LHKJJB_01970 379017 380630 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S3
35 group_611 LHKJJB_04615 199440 200780 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S3
36 group_855 LHKJJB_06755 78127 79734 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
37 group_2791 LHKJJB_08800 86843 88693 -1 AAA domain-containing protein Morganella morganii S3
38 group_1072 LHKJJB_12175 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S3
39 group_1065 LHKJJB_12210 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S3
40 group_3281 LHKJJB_13550 151228 152814 -1 rtcR RNA repair transcriptional activator RtcR Morganella morganii S3
41 group_2871 LHKJJB_14550 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
42 group_68 LHKJJB_14590 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S3
43 group_68 LHKJJB_15320 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S3
44 group_2559 HKOGLL_01400 256842 258365 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S5
45 group_2613 HKOGLL_02010 384528 386141 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S5
46 group_611 HKOGLL_02430 86802 88142 1 qseF two-component system response regulator QseF/GlrR Morganella morganii S5
47 group_855 HKOGLL_04175 153653 155260 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
48 group_2791 HKOGLL_08350 86843 88693 -1 AAA domain-containing protein Morganella morganii S5
49 group_1072 HKOGLL_10790 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S5
50 group_1065 HKOGLL_10825 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S5
51 group_3281 HKOGLL_11480 9629 11215 1 rtcR RNA repair transcriptional activator RtcR Morganella morganii S5
52 group_2871 HKOGLL_13170 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
53 group_68 HKOGLL_13210 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S5
54 group_68 HKOGLL_14440 63720 65174 1 glnG nitrogen regulation protein NR(I) Morganella morganii S5
55 group_1072 F4V73_RS03690 784077 785093 -1 pspF phage shock protein operon transcriptional activator Morganella psychrotolerans
56 group_1065 F4V73_RS03725 789842 791437 1 tyrR transcriptional regulator TyrR Morganella psychrotolerans
57 group_2559 F4V73_RS04690 989312 990832 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella psychrotolerans
58 group_2613 F4V73_RS05370 1138799 1140409 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella psychrotolerans
59 group_611 F4V73_RS07255 1509727 1511067 -1 glrR two-component system response regulator GlrR Morganella psychrotolerans
60 group_855 F4V73_RS11225 386033 387670 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
61 group_2791 F4V73_RS13270 280123 282030 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
62 group_68 F4V73_RS14300 81667 83052 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella psychrotolerans
63 group_2871 F4V73_RS14340 91790 93427 1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
64 group_68 F4V73_RS14530 135619 137106 -1 glnG nitrogen regulation protein NR(I) Morganella psychrotolerans
65 group_1065 PMI_RS06610 1447787 1449352 -1 tyrR transcriptional regulator TyrR Proteus mirabilis HI4320
66 group_1072 PMI_RS06650 1454644 1455648 1 pspF phage shock protein operon transcriptional activator Proteus mirabilis HI4320
67 group_611 PMI_RS09240 2013877 2015214 -1 glrR two-component system response regulator GlrR Proteus mirabilis HI4320
68 group_68 PMI_RS14255 3163007 3164428 1 glnG nitrogen regulation protein NR(I) Proteus mirabilis HI4320
69 group_855 PMI_RS17810 3913195 3914808 -1 sigma 54-interacting transcriptional regulator Proteus mirabilis HI4320