Orthogroup:group_1065


Homologs in group_1065

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06035 FBDBKF_06035 Morganella morganii S1 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
EHELCC_09080 EHELCC_09080 Morganella morganii S2 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
NLDBIP_09460 NLDBIP_09460 Morganella morganii S4 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
LHKJJB_08295 LHKJJB_08295 Morganella morganii S3 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
HKOGLL_07845 HKOGLL_07845 Morganella morganii S5 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
F4V73_RS15870 F4V73_RS15870 Morganella psychrotolerans dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
PMI_RS11300 PMI_RS11300 Proteus mirabilis HI4320 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Distribution of group_1065 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1065 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1065

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1065.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dapD 7

Product

# Product Occurence
1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2171 7 E Amino acid transport and metabolism (E) Tetrahydrodipicolinate N-succinyltransferase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00674 7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] Lysine biosynthesis
Metabolic pathways
Microbial metabolism in diverse environments
Biosynthesis of amino acids		 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

Pfam domain Annotation(s)

Domain ID Occurences Description
PF14602 7 Hexapeptide repeat of succinyl-transferase
PF14805 7 Tetrahydrodipicolinate N-succinyltransferase N-terminal

Annotations of the 391 SwissProt hits

Annotation Number of occurrences
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 125
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 261
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (Fragment) 1
Bifunctional protein GlmU 3
Protein TabB 1

Protein length

Unique protein length 274

Protein length distribution