Orthogroup:group_855



Homologs in group_855

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04325 FBDBKF_04325 Morganella morganii S1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme
EHELCC_05615 EHELCC_05615 Morganella morganii S2 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme
NLDBIP_05935 NLDBIP_05935 Morganella morganii S4 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme
LHKJJB_02815 LHKJJB_02815 Morganella morganii S3 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme
HKOGLL_06290 HKOGLL_06290 Morganella morganii S5 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme
F4V73_RS08770 F4V73_RS08770 Morganella psychrotolerans - D-alanine--D-alanine ligase
PMI_RS06000 PMI_RS06000 Proteus mirabilis HI4320 ddlA D-alanine--D-alanine ligase

Distribution of group_855 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_855 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_855

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_855.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ddl 5
2 - 1
3 ddlA 1

Product

# Product Occurence
1 D-alanine-D-alanine ligase or related ATP-grasp enzyme 5
2 D-alanine--D-alanine ligase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1181 7 MR Cell wall/membrane/envelope biogenesis (M)
General function prediction only (R)
D-alanine-D-alanine ligase or related ATP-grasp enzyme

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01921 7 D-alanine-D-alanine ligase [EC:6.3.2.4] D-Amino acid metabolism
Peptidoglycan biosynthesis
Metabolic pathways
Vancomycin resistance
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01820 7 D-ala D-ala ligase N-terminus
PF07478 7 D-ala D-ala ligase C-terminus

Annotations of the 569 SwissProt hits

Annotation Number of occurrences
Bifunctional enzyme MurC/Ddl 4
D-alanine--D-alanine ligase 524
D-alanine--D-alanine ligase (Fragment) 1
D-alanine--D-alanine ligase A 18
D-alanine--D-alanine ligase B 18
Putative D-alanine--D-lactate ligase 1
Vancomycin B-type resistance protein VanB 1
Vancomycin C-type resistance protein VanC 1
Vancomycin/teicoplanin A-type resistance protein VanA 1

Protein length

Min length 305
Max length 366
Mean length (sd) 313.7 (23.1)
Median length 305.0

Protein length distribution