Orthogroup:group_3281


Homologs in group_3281

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08865 FBDBKF_08865 Morganella morganii S1 rtcB RNA-splicing ligase RtcB, repairs tRNA damage
EHELCC_12660 EHELCC_12660 Morganella morganii S2 rtcB RNA-splicing ligase RtcB, repairs tRNA damage
NLDBIP_13000 NLDBIP_13000 Morganella morganii S4 rtcB RNA-splicing ligase RtcB, repairs tRNA damage
LHKJJB_13555 LHKJJB_13555 Morganella morganii S3 rtcB RNA-splicing ligase RtcB, repairs tRNA damage
HKOGLL_11475 HKOGLL_11475 Morganella morganii S5 rtcB RNA-splicing ligase RtcB, repairs tRNA damage

Distribution of group_3281 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_3281 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3281

Orthogroup content: 5 members

Help

This page summarizes the annotation of all members of the orthologous group group_3281.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rtcB 5

Product

# Product Occurence
1 RNA-splicing ligase RtcB, repairs tRNA damage 5

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1690 5 J Translation, ribosomal structure and biogenesis (J) RNA-splicing ligase RtcB, repairs tRNA damage

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K14415 5 tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01139 5 tRNA-splicing ligase RtcB

Annotations of the 55 SwissProt hits

Annotation Number of occurrences
RNA-splicing ligase RtcB 4
RNA-splicing ligase RtcB homolog 31
RNA-splicing ligase RtcB homolog 1 3
RNA-splicing ligase RtcB homolog 2 3
RNA-splicing ligase RtcB1 1
RNA-splicing ligase RtcB2 1
tRNA-splicing ligase RtcB 12

Protein length

Unique protein length 408

Protein length distribution