PF00486


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00486, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 71 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00486
Description Transcriptional regulatory protein, C terminal

Occurence in the database

PF00486 is associated with 71 different proteins (see tab "Protein list" and "Profile")
The 71 proteins are classified into 11 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_241 FBDBKF_02140 117736 118404 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S1
1 group_760 FBDBKF_03420 88437 89120 -1 kdpE two-component system response regulator KdpE Morganella morganii S1
2 group_2684 FBDBKF_05205 48035 48706 1 qseB quorum sensing response regulator transcription factor QseB Morganella morganii S1
3 group_1142 FBDBKF_06540 148911 149627 1 arcA two-component system response regulator ArcA Morganella morganii S1
4 group_1631 FBDBKF_10740 116092 116811 1 ompR two-component system response regulator OmpR Morganella morganii S1
5 group_1772 FBDBKF_12330 129444 130148 1 cpxR envelope stress response regulator transcription factor CpxR Morganella morganii S1
6 group_1943 FBDBKF_14575 9613 10287 1 phoP two-component system response regulator PhoP Morganella morganii S1
7 group_2187 FBDBKF_16470 17362 18081 -1 baeR two-component system response regulator BaeR Morganella morganii S1
8 group_2237 FBDBKF_17135 12218 12883 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S1
9 group_2267 FBDBKF_17435 18631 19320 -1 phoB phosphate regulon transcriptional regulator PhoB Morganella morganii S1
10 group_2237 EHELCC_01755 342618 343283 -1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S2
11 group_241 EHELCC_02610 505556 506224 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S2
12 group_760 EHELCC_07115 157983 158666 1 kdpE two-component system response regulator KdpE Morganella morganii S2
13 group_2187 EHELCC_08335 134348 135067 -1 baeR two-component system response regulator BaeR Morganella morganii S2
14 group_1142 EHELCC_09585 149483 150199 1 arcA two-component system response regulator ArcA Morganella morganii S2
15 group_2684 EHELCC_12385 132788 133459 -1 qseB quorum sensing response regulator transcription factor QseB Morganella morganii S2
16 group_1772 EHELCC_13975 4557 5261 -1 cpxR envelope stress response regulator transcription factor CpxR Morganella morganii S2
17 group_1631 EHELCC_15075 116082 116801 1 ompR two-component system response regulator OmpR Morganella morganii S2
18 group_1943 EHELCC_15380 39689 40363 1 phoP two-component system response regulator PhoP Morganella morganii S2
19 group_2267 EHELCC_17330 18631 19320 -1 phoB phosphate regulon transcriptional regulator PhoB Morganella morganii S2
20 group_241 NLDBIP_00850 173912 174580 -1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S4
21 group_2237 NLDBIP_01705 336853 337518 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S4
22 group_760 NLDBIP_07440 157856 158539 1 kdpE two-component system response regulator KdpE Morganella morganii S4
23 group_2187 NLDBIP_08660 134348 135067 -1 baeR two-component system response regulator BaeR Morganella morganii S4
24 group_1142 NLDBIP_09965 149483 150199 1 arcA two-component system response regulator ArcA Morganella morganii S4
25 group_2684 NLDBIP_12725 132743 133414 -1 qseB quorum sensing response regulator transcription factor QseB Morganella morganii S4
26 group_1631 NLDBIP_14905 116082 116801 1 ompR two-component system response regulator OmpR Morganella morganii S4
27 group_1772 NLDBIP_15070 8494 9198 -1 cpxR envelope stress response regulator transcription factor CpxR Morganella morganii S4
28 group_1943 NLDBIP_15910 39689 40363 1 phoP two-component system response regulator PhoP Morganella morganii S4
29 group_2267 NLDBIP_17865 23476 24165 1 phoB phosphate regulon transcriptional regulator PhoB Morganella morganii S4
30 group_2237 LHKJJB_00330 55167 55832 -1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S3
31 group_241 LHKJJB_01185 218105 218773 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S3
32 group_2187 LHKJJB_05605 122092 122811 1 baeR two-component system response regulator BaeR Morganella morganii S3
33 group_760 LHKJJB_06975 121602 122285 1 kdpE two-component system response regulator KdpE Morganella morganii S3
34 group_1142 LHKJJB_07790 67039 67755 -1 arcA two-component system response regulator ArcA Morganella morganii S3
35 group_2684 LHKJJB_12585 132788 133459 -1 qseB quorum sensing response regulator transcription factor QseB Morganella morganii S3
36 group_1631 LHKJJB_14440 24925 25644 -1 ompR two-component system response regulator OmpR Morganella morganii S3
37 group_1772 LHKJJB_15540 129444 130148 1 cpxR envelope stress response regulator transcription factor CpxR Morganella morganii S3
38 group_1943 LHKJJB_15930 76323 76997 -1 phoP two-component system response regulator PhoP Morganella morganii S3
39 group_2267 LHKJJB_17785 23474 24163 1 phoB phosphate regulon transcriptional regulator PhoB Morganella morganii S3
40 group_2237 HKOGLL_00370 60678 61343 -1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S5
41 group_241 HKOGLL_01225 223616 224284 1 ompR DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain Morganella morganii S5
42 group_760 HKOGLL_03955 111102 111785 -1 kdpE two-component system response regulator KdpE Morganella morganii S5
43 group_2187 HKOGLL_05310 118939 119658 -1 baeR two-component system response regulator BaeR Morganella morganii S5
44 group_1142 HKOGLL_07340 67039 67755 -1 arcA two-component system response regulator ArcA Morganella morganii S5
45 group_2684 HKOGLL_11200 132788 133459 -1 qseB quorum sensing response regulator transcription factor QseB Morganella morganii S5
46 group_1631 HKOGLL_13060 24925 25644 -1 ompR two-component system response regulator OmpR Morganella morganii S5
47 group_1772 HKOGLL_14660 116107 116811 1 cpxR envelope stress response regulator transcription factor CpxR Morganella morganii S5
48 group_1943 HKOGLL_15050 75535 76209 -1 phoP two-component system response regulator PhoP Morganella morganii S5
49 group_2267 HKOGLL_17795 23474 24163 1 phoB phosphate regulon transcriptional regulator PhoB Morganella morganii S5
50 group_2187 F4V73_RS02985 633283 634002 -1 baeR two-component system response regulator BaeR Morganella psychrotolerans
51 group_241 F4V73_RS03915 829720 830406 -1 copper/silver response regulator transcription factor Morganella psychrotolerans
52 group_241 F4V73_RS04490 950185 950856 1 hprR response regulator transcription factor HprR Morganella psychrotolerans
53 group_2684 F4V73_RS05665 1204348 1205019 1 qseB quorum sensing response regulator transcription factor QseB Morganella psychrotolerans
54 group_2237 F4V73_RS05895 1256716 1257381 1 response regulator transcription factor Morganella psychrotolerans
55 group_1943 F4V73_RS07370 1537853 1538527 1 phoP two-component system response regulator PhoP Morganella psychrotolerans
56 group_241 F4V73_RS10180 146869 147552 -1 response regulator transcription factor Morganella psychrotolerans
57 group_760 F4V73_RS11480 441007 441690 1 kdpE two-component system response regulator KdpE Morganella psychrotolerans
58 group_1631 F4V73_RS14455 119882 120604 1 ompR two-component system response regulator OmpR Morganella psychrotolerans
59 group_1142 F4V73_RS15395 63935 64651 -1 arcA two-component system response regulator ArcA Morganella psychrotolerans
60 group_2267 F4V73_RS16610 142358 143047 -1 phoB phosphate regulon transcriptional regulator PhoB Morganella psychrotolerans
61 group_1772 F4V73_RS17160 63901 64602 1 cpxR envelope stress response regulator transcription factor CpxR Morganella psychrotolerans
62 group_2267 PMI_RS00250 78944 79633 1 phoB phosphate regulon transcriptional regulator PhoB Proteus mirabilis HI4320
63 group_1943 PMI_RS04350 977653 978327 -1 phoP two-component system response regulator PhoP Proteus mirabilis HI4320
64 group_760 PMI_RS05915 1298782 1299465 -1 kdpE two-component system response regulator KdpE Proteus mirabilis HI4320
65 group_2187 PMI_RS07750 1697128 1697835 1 baeR two-component system response regulator BaeR Proteus mirabilis HI4320
66 group_2237 PMI_RS08300 1813416 1814081 1 response regulator transcription factor Proteus mirabilis HI4320
67 group_3875 PMI_RS13425 2973920 2974780 -1 winged helix family transcriptional regulator Proteus mirabilis HI4320
68 group_1631 PMI_RS14290 3171999 3172721 1 ompR two-component system response regulator OmpR Proteus mirabilis HI4320
69 group_1772 PMI_RS15820 3513754 3514452 -1 cpxR envelope stress response regulator transcription factor CpxR Proteus mirabilis HI4320
70 group_1142 PMI_RS18505 4062408 4063124 -1 arcA two-component system response regulator ArcA Proteus mirabilis HI4320