PF00496

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00496
Protein list: lists the 62 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00496
Description Bacterial extracellular solute-binding proteins, family 5 Middle

Occurence in the database

PF00496 is associated with 62 different proteins
The 62 proteins are classified into 9 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_942 FBDBKF_04430 79654 81318 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S1
1 group_417 FBDBKF_05295 63660 65306 -1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella morganii S1
2 group_418 FBDBKF_05300 65428 67059 -1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S1
3 group_1031 FBDBKF_05305 67802 69370 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S1
4 group_416 FBDBKF_05570 121453 123087 -1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S1
5 group_1073 FBDBKF_05620 130975 132663 1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S1
6 group_1226 FBDBKF_06690 176814 178409 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S1
7 group_2811 FBDBKF_08940 5110 6684 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S1
8 group_1757 FBDBKF_11990 46588 48204 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S1
9 group_942 EHELCC_05720 139111 140775 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S2
10 group_1226 EHELCC_09735 177386 178981 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S2
11 group_2811 EHELCC_10470 139420 140994 1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S2
12 group_1073 EHELCC_11970 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S2
13 group_416 EHELCC_12020 58407 60041 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S2
14 group_1031 EHELCC_12285 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S2
15 group_418 EHELCC_12290 114435 116066 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S2
16 group_417 EHELCC_12295 116188 117834 1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella morganii S2
17 group_1757 EHELCC_14315 86501 88117 1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S2
18 group_942 NLDBIP_06040 180176 181840 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S4
19 group_1226 NLDBIP_10115 177386 178981 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S4
20 group_2811 NLDBIP_10815 117691 119265 1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S4
21 group_1073 NLDBIP_12310 48786 50474 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S4
22 group_416 NLDBIP_12360 58362 59996 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S4
23 group_1031 NLDBIP_12625 112079 113647 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S4
24 group_418 NLDBIP_12630 114390 116021 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S4
25 group_417 NLDBIP_12635 116143 117789 1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella morganii S4
26 group_1757 NLDBIP_15410 90438 92054 1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S4
27 group_942 LHKJJB_02920 157700 159364 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S3
28 group_1226 LHKJJB_07640 38257 39852 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S3
29 group_2811 LHKJJB_10540 72263 73837 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S3
30 group_1073 LHKJJB_12170 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S3
31 group_416 LHKJJB_12220 58407 60041 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S3
32 group_1031 LHKJJB_12485 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S3
33 group_418 LHKJJB_12490 114435 116066 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S3
34 group_417 LHKJJB_12495 116188 117834 1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella morganii S3
35 group_1757 LHKJJB_15200 46588 48204 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S3
36 group_942 HKOGLL_06395 79564 81228 1 sgrR HTH-type transcriptional regulator SgrR Morganella morganii S5
37 group_1226 HKOGLL_07190 38257 39852 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S5
38 group_1073 HKOGLL_10785 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S5
39 group_416 HKOGLL_10835 58407 60041 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S5
40 group_1031 HKOGLL_11100 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S5
41 group_418 HKOGLL_11105 114435 116066 1 oppA ABC-type oligopeptide transport system, periplasmic component Morganella morganii S5
42 group_417 HKOGLL_11110 116188 117834 1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella morganii S5
43 group_2811 HKOGLL_13600 5564 7138 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S5
44 group_1757 HKOGLL_14320 33251 34867 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S5
45 group_1073 F4V73_RS03685 782296 784005 -1 sapA ABC transporter substrate-binding protein SapA Morganella psychrotolerans
46 group_416 F4V73_RS03735 792389 793945 1 peptide ABC transporter substrate-binding protein Morganella psychrotolerans
47 group_417 F4V73_RS05750 1220423 1222063 -1 oppA oligopeptide ABC transporter substrate-binding protein OppA Morganella psychrotolerans
48 group_418 F4V73_RS05755 1222185 1223816 -1 ABC transporter substrate-binding protein Morganella psychrotolerans
49 group_1031 F4V73_RS05760 1224560 1226128 1 ABC transporter substrate-binding protein Morganella psychrotolerans
50 group_942 F4V73_RS08875 1840913 1842577 1 sgrR HTH-type transcriptional regulator SgrR Morganella psychrotolerans
51 group_1757 F4V73_RS14665 168180 169793 1 dipeptide ABC transporter periplasmic-binding protein DppA Morganella psychrotolerans
52 group_1226 F4V73_RS15250 35841 37436 1 ABC transporter substrate-binding protein Morganella psychrotolerans
53 group_416 PMI_RS06600 1445339 1446958 -1 peptide ABC transporter substrate-binding protein Proteus mirabilis HI4320
54 group_1073 PMI_RS06655 1455927 1457618 1 sapA ABC transporter substrate-binding protein SapA Proteus mirabilis HI4320
55 group_417 PMI_RS07140 1558636 1560273 -1 oppA oligopeptide ABC transporter substrate-binding protein OppA Proteus mirabilis HI4320
56 group_418 PMI_RS07145 1560540 1562180 -1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
57 group_1031 PMI_RS07165 1567449 1569014 1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
58 group_942 PMI_RS10285 2255359 2257038 1 sgrR HTH-type transcriptional regulator SgrR Proteus mirabilis HI4320
59 group_1226 PMI_RS12440 2758158 2759741 -1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
60 group_1757 PMI_RS14065 3122524 3124131 -1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
61 group_2811 PMI_RS14570 3229951 3231528 -1 nikA nickel ABC transporter substrate-binding protein Proteus mirabilis HI4320