Orthogroup:group_418


Homologs in group_418

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18770 FBDBKF_18770 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
FBDBKF_20460 FBDBKF_20460 Morganella morganii S1 tetC tetracyline resistance-associated transcriptional repressor TetC
EHELCC_16965 EHELCC_16965 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_18345 NLDBIP_18345 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_09280 LHKJJB_09280 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_08830 HKOGLL_08830 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS13820 F4V73_RS13820 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator
PMI_RS05690 PMI_RS05690 Proteus mirabilis HI4320 - TetR family transcriptional regulator

Distribution of group_418 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_418 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_418

Orthogroup content: 8 members

Help

This page summarizes the annotation of all members of the orthologous group group_418.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 acrR 5
2 tetC 1
3 - 2

Product

# Product Occurence
1 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA 5
2 tetracyline resistance-associated transcriptional repressor TetC 1
3 TetR/AcrR family transcriptional regulator 1
4 TetR family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 8 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19047 7 TetR/AcrR family transcriptional regulator, repressor of tetCD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 8 Bacterial regulatory proteins, tetR family

Annotations of the 47 SwissProt hits

Annotation Number of occurrences
A-factor receptor protein 1
Fatty acid metabolism regulator protein 1
HTH-type transcriptional regulator AcrR 3
HTH-type transcriptional regulator CymR 1
HTH-type transcriptional regulator EthR 1
HTH-type transcriptional regulator MW2498 1
HTH-type transcriptional regulator MtrR 1
HTH-type transcriptional regulator QacR 3
HTH-type transcriptional regulator SA2364 1
HTH-type transcriptional regulator SAB2452 1
HTH-type transcriptional regulator SACOL2593 1
HTH-type transcriptional regulator SAOUHSC_02897 1
HTH-type transcriptional regulator SAR2658 1
HTH-type transcriptional regulator SAS2464 1
HTH-type transcriptional regulator SAUSA300_2515 1
HTH-type transcriptional regulator SAV2578 1
HTH-type transcriptional regulator SrpR 1
HTH-type transcriptional regulator TtgR 1
HTH-type transcriptional regulator UidR 4
HTH-type transcriptional repressor BepR 1
HTH-type transcriptional repressor DhaR 1
HTH-type transcriptional repressor KstR2 2
HTH-type transcriptional repressor NemR 2
Probable HTH-type transcriptional regulator ArpR 1
Probable HTH-type transcriptional regulator TtgR 1
Probable acrEF/envCD operon repressor 2
Transcriptional regulator AcuR 1
Transcriptional repressor Mce3R 1
Transposon Tn10 TetC protein 1
Uncharacterized HTH-type transcriptional regulator TtgW 1
Uncharacterized HTH-type transcriptional regulator YcnC 1
Uncharacterized HTH-type transcriptional regulator YdeS 1
Uncharacterized HTH-type transcriptional regulator YerO 1
Uncharacterized HTH-type transcriptional regulator YhgD 1
Uncharacterized HTH-type transcriptional regulator YuxN 1
Uncharacterized HTH-type transcriptional regulator YvkB 1
Uncharacterized HTH-type transcriptional regulator YwcC 1

Protein length

Min length 197
Max length 207
Mean length (sd) 198.5 (3.5)
Median length 197.0

Protein length distribution