Homologs in group_873

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04430 FBDBKF_04430 100.0 Morganella morganii S1 sgrR HTH-type transcriptional regulator SgrR
EHELCC_05720 EHELCC_05720 100.0 Morganella morganii S2 sgrR HTH-type transcriptional regulator SgrR
LHKJJB_02920 LHKJJB_02920 100.0 Morganella morganii S3 sgrR HTH-type transcriptional regulator SgrR
HKOGLL_06395 HKOGLL_06395 100.0 Morganella morganii S5 sgrR HTH-type transcriptional regulator SgrR
F4V73_RS08875 F4V73_RS08875 87.9 Morganella psychrotolerans sgrR HTH-type transcriptional regulator SgrR
PMI_RS10285 PMI_RS10285 59.4 Proteus mirabilis HI4320 sgrR HTH-type transcriptional regulator SgrR

Distribution of the homologs in the orthogroup group_873

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_873

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N125 0.0 811 68 1 554 3 sgrR HTH-type transcriptional regulator SgrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q66EM6 0.0 700 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TQA7 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis (strain Pestoides F)
Q1CMQ0 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Nepal516)
Q74Q56 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis
Q1C1Y8 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJG7 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q6D0F8 0.0 653 57 2 553 3 sgrR HTH-type transcriptional regulator SgrR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P33595 0.0 627 53 3 553 1 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain K12)
Q1RGC7 0.0 625 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain UTI89 / UPEC)
Q8FL80 0.0 625 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A7B8 0.0 625 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O1:K1 / APEC
Q326G6 0.0 625 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella boydii serotype 4 (strain Sb227)
Q0TLR9 0.0 624 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q3Z5U2 0.0 623 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella sonnei (strain Ss046)
Q32K24 0.0 623 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella dysenteriae serotype 1 (strain Sd197)
Q83SP3 0.0 622 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri
Q0T8C8 0.0 622 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri serotype 5b (strain 8401)
Q8XA02 0.0 621 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O157:H7
Q8ZRV0 0.0 613 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z9I4 0.0 612 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhi
Q5PDG5 0.0 612 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57TF2 0.0 608 52 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella choleraesuis (strain SC-B67)
P46890 3.65e-45 171 27 16 576 4 ybaE Uncharacterized protein YbaE Escherichia coli (strain K12)
O07570 6.51e-39 153 23 15 567 3 yhjP Uncharacterized protein YhjP Bacillus subtilis (strain 168)
P33950 2.34e-07 57 26 7 191 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P23847 6.31e-06 52 22 7 196 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
Q8FUX2 1.89e-05 51 28 5 141 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
Q8YDG6 2.01e-05 51 28 5 141 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YJK2 7.76e-05 49 28 5 141 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 7.76e-05 49 28 5 141 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
P44572 0.000133 48 25 7 163 3 HI_0213 Putative binding protein HI_0213 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77348 0.001 45 30 1 83 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_06040
Feature type CDS
Gene sgrR
Product HTH-type transcriptional regulator SgrR
Location 180176 - 181840 (strand: 1)
Length 1665 (nucleotides) / 554 (amino acids)

Contig

Accession ZDB_521
Length 325332 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_873
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle
PF12793 Sugar transport-related sRNA regulator N-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4533 Transcription (K) K DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11925 SgrR family transcriptional regulator - -

Protein Sequence

MSTPRLQHQFIRLWQYHQGKETETTLQEIADILHCSRRHVRSLLSSMQTAGWLSWQAETGRGKRSRLCFLQSGRDLQHARAEQLIEQDNIEKLVAMVNDKDAMRQMVLSQLERSFRQGKSLLRIVYYRPFYNLLPGSPLRRSEVHLLSQIFNGLTAINEENGEAVPALAHHWQQTGDKQWRFWLRPAIFFHHGRELQMVDIISSFERLRDTHPLFSHIRTVRSDMPYIIDITLNEADSWFPVLTGSPHAAILPHEWQELPDFARRPVGTGPYQVICNNDRKLTIRAFDHYYGFRALLDEVSVLVVPELEEKMVCTTLHIGADGPERDSLDSRMEEGCYFLLHDTRSAKGEREDIRRWLNSLMTPVNLLYHCEPLYQRHWWPAYGLLLRWHHSKLIPPCEKPADLTELTLTYYQDHHEYHAIGKLLQQLLAEQGVKLTINITDYDTWFNGDCDSDFWLATANFYKPLDFSVFATLYELPLLRRCLGDDLRAPLKQWRQRSLSLAAWCEQIIDRQMLFPLFHHWLELQGQRSMRGVKMNTFGWFDFKSAWFIPPES

Flanking regions ( +/- flanking 50bp)

TAATATACGGAAATAAAAATGGACAGAAAACCGACCGGAGTTCCTCTTTTATGAGCACACCACGCCTCCAGCACCAGTTTATCCGCCTGTGGCAGTATCATCAGGGAAAGGAGACCGAAACCACCCTTCAGGAGATCGCCGATATCCTGCACTGCTCCCGCCGTCACGTCCGTTCTCTGCTCAGCAGTATGCAGACAGCAGGCTGGCTTAGCTGGCAAGCGGAAACCGGACGGGGTAAGCGCTCACGTCTCTGTTTTCTGCAAAGCGGACGGGACCTCCAGCACGCCCGTGCCGAACAGCTGATCGAACAGGACAATATCGAAAAACTGGTGGCGATGGTCAATGATAAGGACGCGATGCGCCAGATGGTGTTATCTCAGCTGGAGCGCAGCTTCCGGCAGGGAAAAAGCCTGCTGCGTATTGTCTATTACCGCCCTTTTTATAATTTACTGCCCGGTTCGCCGCTGCGCCGCTCGGAAGTCCATCTGCTGAGCCAGATTTTTAACGGACTTACCGCAATAAATGAGGAAAACGGGGAAGCTGTCCCGGCGCTGGCGCATCACTGGCAGCAGACCGGTGACAAACAGTGGCGTTTCTGGCTGCGTCCGGCAATTTTTTTCCATCACGGCCGTGAGTTGCAGATGGTGGATATCATTTCCTCTTTTGAGCGCCTGCGTGACACACACCCGCTGTTCAGTCATATCCGCACTGTCCGTTCCGATATGCCTTACATTATTGATATCACACTGAATGAGGCCGACAGCTGGTTCCCGGTACTGACCGGCAGCCCGCACGCTGCCATTCTGCCCCATGAGTGGCAGGAACTGCCGGATTTCGCCCGCCGCCCTGTCGGCACCGGCCCCTATCAGGTTATCTGTAACAATGACCGTAAACTGACGATCCGCGCCTTTGACCATTATTACGGCTTCCGCGCCCTGCTCGACGAAGTTTCGGTGCTGGTGGTGCCGGAGCTGGAAGAAAAAATGGTCTGTACCACCCTGCATATCGGTGCGGACGGGCCGGAGCGGGATTCTCTCGACAGCCGGATGGAGGAAGGCTGCTATTTCCTGCTGCACGACACGCGTTCAGCAAAAGGAGAGCGGGAAGATATCCGCCGCTGGCTCAACAGCCTGATGACCCCCGTCAATCTGCTGTATCACTGCGAACCCCTGTATCAGCGCCACTGGTGGCCGGCTTACGGGCTGCTGCTGCGCTGGCATCACAGCAAACTTATCCCGCCCTGTGAAAAACCGGCTGACCTGACAGAGCTGACACTGACCTATTATCAGGATCATCACGAATACCATGCTATCGGCAAATTATTGCAGCAGTTACTGGCAGAACAGGGTGTAAAACTGACGATTAATATCACTGATTACGACACCTGGTTTAACGGCGATTGTGACAGTGATTTCTGGCTGGCGACCGCCAACTTTTATAAGCCGCTGGATTTTTCGGTTTTCGCCACCCTGTATGAGCTGCCGCTGCTGCGCCGCTGTCTGGGTGATGATCTGCGTGCGCCGCTGAAGCAATGGCGGCAGCGTTCCCTGTCTCTGGCGGCATGGTGTGAGCAGATCATTGACAGGCAGATGCTGTTCCCGCTGTTCCATCACTGGCTTGAATTACAGGGGCAGCGCAGTATGCGGGGCGTCAAAATGAATACCTTCGGCTGGTTTGATTTTAAATCCGCCTGGTTTATCCCCCCGGAAAGTTAATTCACAGAAAAAGGCAAAGTTATAAACACCCTCTGATAAAAAACCGGCTT