Orthogroup:group_1073


Homologs in group_1073

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06085 FBDBKF_06085 Morganella morganii S1 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
EHELCC_09130 EHELCC_09130 Morganella morganii S2 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
NLDBIP_09510 NLDBIP_09510 Morganella morganii S4 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
LHKJJB_08245 LHKJJB_08245 Morganella morganii S3 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
HKOGLL_07795 HKOGLL_07795 Morganella morganii S5 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
F4V73_RS15825 F4V73_RS15825 Morganella psychrotolerans rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
PMI_RS11355 PMI_RS11355 Proteus mirabilis HI4320 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM

Distribution of group_1073 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1073 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1073

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1073.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlmM 7

Product

# Product Occurence
1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2933 7 J Translation, ribosomal structure and biogenesis (J) 23S rRNA C2498 (ribose-2'-O)-methylase RlmM

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06968 7 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01728 7 FtsJ-like methyltransferase
PF18125 7 RlmM ferredoxin-like domain
PF21239 7 Ribosomal RNA large subunit methyltransferase M, N-terminal

Annotations of the 170 SwissProt hits

Annotation Number of occurrences
Ribosomal RNA large subunit methyltransferase M 170

Protein length

Unique protein length 365

Protein length distribution