Homologs in group_2790

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08940 FBDBKF_08940 43.2 Morganella morganii S1 nikA nickel ABC transporter substrate-binding protein
EHELCC_10470 EHELCC_10470 43.2 Morganella morganii S2 nikA nickel ABC transporter substrate-binding protein
NLDBIP_10815 NLDBIP_10815 43.2 Morganella morganii S4 nikA nickel ABC transporter substrate-binding protein
LHKJJB_10540 LHKJJB_10540 43.2 Morganella morganii S3 nikA nickel ABC transporter substrate-binding protein
HKOGLL_13600 HKOGLL_13600 43.2 Morganella morganii S5 nikA nickel ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_2790

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2790

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33590 2.47e-157 461 44 3 520 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
Q2FVE7 3.41e-140 418 39 4 530 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain NCTC 8325 / PS 47)
A0A0H3JTL0 4.03e-139 415 39 5 531 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain Mu50 / ATCC 700699)
P23847 6.24e-36 144 26 16 533 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
P33950 6.05e-34 138 27 15 512 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZGV7 3.29e-32 133 26 13 479 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
P76128 3.48e-32 132 25 14 527 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
A0A0H2ZI72 3.83e-31 130 27 18 495 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q8ZQM3 9.9e-30 125 26 14 460 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z863 1.29e-29 125 26 14 460 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
Q5PGP4 2.04e-29 124 26 14 460 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q6D3B0 3.95e-29 124 26 10 430 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q57RB1 3.99e-29 124 26 14 460 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
P06109 2.08e-28 122 28 13 396 3 xp55 Protein XP55 Streptomyces lividans
A0A0H2ZGV2 9.05e-28 120 26 20 562 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q8FWN7 2.33e-27 119 24 15 501 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 2.33e-27 119 24 15 501 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 2.33e-27 119 24 15 501 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 2.33e-27 119 24 15 501 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
P42061 2.33e-27 119 25 12 491 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
Q32IB6 2.36e-27 119 25 13 451 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
Q8YBP0 2.51e-27 119 24 15 501 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
A0A0H2ZGW2 3.32e-27 118 24 10 449 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q323W4 4.54e-27 117 25 13 451 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q8X6V9 4.89e-27 117 25 13 451 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
Q1RE95 4.94e-27 117 25 13 451 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 4.94e-27 117 25 13 451 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 4.94e-27 117 25 13 451 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q9HVS4 1.22e-26 117 24 10 449 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q821B3 1.62e-26 116 25 13 453 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q3Z3V3 1.95e-26 115 25 13 453 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
Q0TJL8 2.73e-26 115 25 13 451 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P75797 8.66e-26 114 25 13 453 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q0T6D2 6.27e-25 111 25 14 455 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
Q46863 1.54e-20 98 25 17 495 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
A0A0H2ZGN2 2.55e-20 97 24 12 458 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HVS1 6.85e-20 96 24 15 488 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23843 2.89e-19 94 23 19 489 1 oppA Periplasmic oligopeptide-binding protein OppA Escherichia coli (strain K12)
P26906 6.33e-17 87 23 18 503 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
P77348 1.01e-16 86 23 16 463 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
P06202 1.36e-15 83 22 19 489 1 oppA Periplasmic oligopeptide-binding protein OppA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P36634 9.78e-15 80 22 10 466 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P71370 2.95e-14 79 20 17 485 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q47622 3.93e-14 78 21 15 526 3 sapA Probable ABC transporter periplasmic-binding protein SapA Escherichia coli (strain K12)
P24141 7.25e-14 77 23 21 491 1 oppA Oligopeptide-binding protein OppA Bacillus subtilis (strain 168)
Q8YDG6 3.64e-13 75 25 16 375 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YJK2 1.1e-12 73 24 16 373 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 1.1e-12 73 24 16 373 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
Q8FUX2 2.55e-12 72 24 15 373 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
P45285 5.9e-12 71 22 16 485 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P55691 2.34e-11 70 20 16 529 3 NGR_a00920 Uncharacterized protein y4wM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q2G2P5 8.64e-11 67 22 19 478 1 nikA Nickel-binding protein NikA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q02VA9 1.79e-10 67 23 14 356 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. cremoris (strain SK11)
Q9RU24 2.06e-10 67 21 13 414 1 DR_1571 Probable ABC transporter-binding protein DR_1571 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q8FW84 2.11e-10 67 21 21 552 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
Q07741 2.18e-10 67 23 14 361 1 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis
Q8YC41 2.86e-10 66 21 22 552 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YKJ5 3.44e-10 66 21 21 552 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 3.44e-10 66 21 21 552 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q9CEK0 3.92e-10 66 23 14 356 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis (strain IL1403)
A9CKL4 3.3e-09 63 20 17 514 3 yejA Probable peptide-binding protein YejA Agrobacterium fabrum (strain C58 / ATCC 33970)
A9CIN5 3.54e-07 56 23 23 533 3 yepA Peptidoglycan-binding protein YepA Agrobacterium fabrum (strain C58 / ATCC 33970)
P55669 6.35e-06 52 22 9 315 3 NGR_a01440 Probable peptide ABC transporter periplasmic-binding protein y4tO Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P31306 7.66e-06 52 24 11 212 1 sarA Oligopeptide-binding protein SarA Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
P35592 1.12e-05 52 23 10 222 3 aliA Oligopeptide-binding protein AliA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P0A4G1 5.85e-05 49 26 11 237 1 aliB Oligopeptide-binding protein AliB Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4G0 5.85e-05 49 26 11 237 3 aliB Oligopeptide-binding protein AliB Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14570
Feature type CDS
Gene nikA
Product nickel ABC transporter substrate-binding protein
Location 3229951 - 3231528 (strand: -1)
Length 1578 (nucleotides) / 525 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2790
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15584 nickel transport system substrate-binding protein ABC transporters -

Protein Sequence

MKPLFTVIPTLLLTLACVFPAFANQSNNILDYASTKDIRDINPHLYSGEMAAQNMVFEPLVLNTDKGVAPYLAQRWEISPDGKSYTFFLRQDVTFSDGEPFNAQAVKLNIEAVLDNYQRHAWLELVRQIDSVEVIDQYTVKLNLKNPYYPTLTELGLTRPFRFISPKSFINGKTKTGVSHYIGTGPWVLTEHKKDQYAEFKVNPHYWGQKPALTGVMWRVIPDRQTMLLSLQKGDIQLIFGADGDMLDMDSFDALMASDKFKTQMSAPIASRAIVLNSSRPITSSQKVRQALEYAVDKEGIAQGILAGSEKVADTLMARSVPYCDFDSPTYIYQPEKAASLLEEEGWLLPAGKTVREKQGKPLQLLLSYNVNNAVEKEIAELLQDDFKKIGVALTVLGEEKQAFLDRQKSGDFDLQYSLSWGTPYDPASFVSSFRIPAHADYQGQKGLANKAQLDAMIGELLITPDEHRRQTLYQRLFTSLAEQAVYIPLTYSRTKAIYRSELENVGFNPSQYEIPFEKMRFKAE

Flanking regions ( +/- flanking 50bp)

TGATCCATGCTCAGAAAAATAATCGATGAGAATGATAAAAGGAAAATAATGTGAAACCTCTATTTACAGTTATTCCTACACTATTATTAACATTGGCGTGCGTATTTCCTGCTTTTGCCAATCAAAGTAATAATATATTGGATTATGCCAGTACAAAAGATATCCGTGATATTAACCCCCATCTTTATTCCGGTGAAATGGCCGCACAAAACATGGTATTTGAACCTTTGGTTTTAAATACCGATAAGGGGGTTGCACCTTATTTAGCACAACGCTGGGAAATTTCTCCTGATGGTAAAAGTTATACCTTTTTCTTGCGCCAAGACGTTACATTTAGTGATGGCGAACCTTTTAATGCGCAAGCGGTAAAACTTAATATTGAGGCTGTATTAGATAATTATCAGCGTCATGCATGGCTAGAATTGGTACGTCAAATCGACAGTGTCGAGGTTATCGATCAGTATACTGTTAAGCTAAATTTAAAAAATCCCTATTATCCAACCTTAACTGAACTTGGCTTAACTCGCCCATTTCGTTTTATTTCACCTAAATCATTTATTAACGGTAAAACTAAAACAGGGGTGAGTCATTATATTGGTACGGGGCCTTGGGTGCTCACGGAACATAAGAAAGATCAATATGCTGAATTTAAGGTTAACCCTCATTATTGGGGGCAAAAACCAGCATTAACTGGGGTGATGTGGCGAGTGATCCCCGATAGACAGACAATGCTATTATCCTTACAAAAAGGAGATATTCAGCTAATTTTTGGTGCAGATGGCGACATGTTAGATATGGACTCTTTTGACGCATTAATGGCATCTGATAAATTTAAAACACAAATGAGTGCACCTATTGCTTCTCGTGCTATTGTGCTCAACAGTAGTCGCCCTATTACTTCAAGCCAAAAAGTACGCCAAGCATTAGAGTATGCCGTTGATAAAGAAGGGATTGCTCAAGGTATTTTAGCGGGAAGTGAAAAAGTCGCTGATACATTAATGGCAAGAAGTGTACCTTATTGCGATTTTGATTCACCAACTTATATTTATCAACCGGAAAAAGCTGCCTCGTTATTAGAAGAGGAAGGCTGGCTATTACCTGCGGGTAAAACAGTGCGTGAAAAACAGGGAAAACCGTTGCAGTTATTGCTCTCTTATAATGTGAATAATGCGGTTGAAAAAGAGATAGCCGAACTATTGCAAGATGATTTTAAGAAAATTGGCGTGGCACTGACGGTATTAGGGGAAGAGAAACAGGCCTTTTTAGATAGACAGAAAAGTGGTGATTTCGATTTACAGTATTCTCTTTCGTGGGGAACACCTTACGATCCCGCCTCTTTTGTCTCATCCTTTAGAATTCCAGCTCATGCTGATTACCAGGGACAGAAAGGGTTAGCCAATAAAGCACAATTAGATGCGATGATTGGCGAGTTGTTGATTACGCCAGATGAACATCGCCGTCAGACATTATATCAACGCTTATTTACCTCATTAGCGGAGCAAGCCGTCTATATACCATTAACCTATTCGCGTACTAAAGCGATTTACCGTAGTGAATTGGAAAACGTTGGTTTTAATCCATCTCAATATGAAATACCTTTTGAAAAGATGCGTTTTAAAGCCGAATAACCGATTAATTTAAGAGGTTACTTCAATATGGCACTGATCCGGTGCCATAT