Orthogroup:group_417


Homologs in group_417

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8 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18750 FBDBKF_18750 Morganella morganii S1 - Integrase
EHELCC_15325 EHELCC_15325 Morganella morganii S2 - Integrase
NLDBIP_15855 NLDBIP_15855 Morganella morganii S4 - Integrase
LHKJJB_15985 LHKJJB_15985 Morganella morganii S3 - Integrase
HKOGLL_15105 HKOGLL_15105 Morganella morganii S5 - Integrase
PMI_RS02285 PMI_RS02285 Proteus mirabilis HI4320 - tyrosine-type recombinase/integrase
PMI_RS04385 PMI_RS04385 Proteus mirabilis HI4320 - site-specific integrase
PMI_RS04655 PMI_RS04655 Proteus mirabilis HI4320 - phage integrase Arm DNA-binding domain-containing protein

Distribution of group_417 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_417 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_417

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_417.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 8

Product

# Product Occurence
1 Integrase 5
2 tyrosine-type recombinase/integrase 1
3 site-specific integrase 1
4 phage integrase Arm DNA-binding domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4973 1 L Replication, recombination and repair (L) Site-specific recombinase XerC
COG4974 7 L Replication, recombination and repair (L) Site-specific recombinase XerD

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 8 Phage integrase family
PF09003 8 Bacteriophage lambda integrase, Arm DNA-binding domain
PF14659 1 Phage integrase, N-terminal SAM-like domain

Annotations of the 5 SwissProt hits

Annotation Number of occurrences
Integrase 4
Prophage integrase IntE 1

Protein length

Min length 333
Max length 377
Mean length (sd) 371.2 (15.5)
Median length 377.0

Protein length distribution