Homologs in group_1166

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_09735 EHELCC_09735 100.0 Morganella morganii S2 ddpA ABC-type transport system, periplasmic component
NLDBIP_10115 NLDBIP_10115 100.0 Morganella morganii S4 ddpA ABC-type transport system, periplasmic component
LHKJJB_07640 LHKJJB_07640 100.0 Morganella morganii S3 ddpA ABC-type transport system, periplasmic component
HKOGLL_07190 HKOGLL_07190 100.0 Morganella morganii S5 ddpA ABC-type transport system, periplasmic component
F4V73_RS15250 F4V73_RS15250 93.4 Morganella psychrotolerans - ABC transporter substrate-binding protein
PMI_RS12440 PMI_RS12440 71.9 Proteus mirabilis HI4320 - ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_1166

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1166

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06109 4.81e-46 172 29 15 485 3 xp55 Protein XP55 Streptomyces lividans
P42061 5.65e-33 135 27 12 445 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
Q0TJL8 1.52e-21 101 25 21 522 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q323W4 2.24e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q8X6V9 2.39e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
Q1RE95 3.83e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 3.83e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 3.83e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q32IB6 4.27e-21 100 25 21 522 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
P75797 6.6e-21 99 25 20 521 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q821B3 6.97e-21 99 25 21 522 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q3Z3V3 7.56e-21 99 25 21 522 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
Q6D3B0 2.39e-20 97 26 18 501 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q57RB1 2.5e-20 97 25 19 521 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
Q8Z863 3.71e-20 97 25 19 521 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
Q0T6D2 5.28e-20 96 25 21 524 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
Q8ZQM3 5.83e-20 96 24 19 521 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PGP4 7.57e-20 96 25 19 521 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P76128 4.92e-19 93 25 21 537 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
P33590 8.66e-18 90 24 12 407 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
Q2FVE7 2.59e-17 88 23 19 430 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q02VA9 8.79e-17 87 25 12 379 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. cremoris (strain SK11)
Q07741 1.04e-16 87 25 12 379 1 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis
Q9CEK0 1.93e-16 85 24 16 446 3 oppA Oligopeptide-binding protein OppA Lactococcus lactis subsp. lactis (strain IL1403)
A0A0H3JTL0 2.6e-16 85 23 19 430 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain Mu50 / ATCC 700699)
P33950 4.57e-16 84 23 19 499 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P23847 4.71e-15 81 22 17 505 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
P24141 2.82e-14 79 23 20 419 1 oppA Oligopeptide-binding protein OppA Bacillus subtilis (strain 168)
Q9HVS1 2.28e-13 76 23 14 380 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGN2 3.05e-13 75 23 14 380 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
P55691 3.97e-13 75 24 17 447 3 NGR_a00920 Uncharacterized protein y4wM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P66772 8.55e-13 74 23 16 415 3 BQ2027_MB1311C Uncharacterized protein Mb1311c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGU5 8.55e-13 74 23 16 415 1 Rv1280c Uncharacterized protein Rv1280c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGU4 8.55e-13 74 23 16 415 3 MT1317 Uncharacterized protein MT1317 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P26906 1.6e-12 73 19 17 476 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
P23843 1.64e-12 73 22 21 531 1 oppA Periplasmic oligopeptide-binding protein OppA Escherichia coli (strain K12)
A0A0H2ZGV7 1.03e-11 70 24 18 434 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
P06202 2.95e-11 69 22 17 421 1 oppA Periplasmic oligopeptide-binding protein OppA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8FWN7 1.03e-10 67 26 13 335 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 1.03e-10 67 26 13 335 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 1.03e-10 67 26 13 335 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 1.03e-10 67 26 13 335 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q8YBP0 1.08e-10 67 26 13 335 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P77348 2.6e-10 66 23 11 355 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
Q8YDG6 7.73e-10 65 26 15 375 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YJK2 4.22e-09 62 26 15 375 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 4.22e-09 62 26 15 375 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
Q8FUX2 4.57e-09 62 26 15 375 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
A0A0H2ZGV2 5.17e-09 62 22 14 385 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
A9CIN5 7.45e-09 62 21 18 495 3 yepA Peptidoglycan-binding protein YepA Agrobacterium fabrum (strain C58 / ATCC 33970)
A9CKL4 1.9e-08 60 21 19 510 3 yejA Probable peptide-binding protein YejA Agrobacterium fabrum (strain C58 / ATCC 33970)
Q9X4Y1 4.14e-08 59 23 17 434 2 agpA Periplasmic alpha-galactoside-binding protein Rhizobium meliloti (strain 1021)
Q8FW84 4.2e-08 59 23 16 364 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
P33913 4.34e-08 59 27 12 233 1 yejA Uncharacterized protein YejA Escherichia coli (strain K12)
Q8YC41 5.39e-08 59 24 9 241 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YKJ5 5.4e-08 59 24 9 241 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 5.4e-08 59 24 9 241 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q2G2P5 1.14e-07 58 21 15 392 1 nikA Nickel-binding protein NikA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q9RU24 1.25e-07 58 21 14 393 1 DR_1571 Probable ABC transporter-binding protein DR_1571 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
O07570 1.4e-07 57 20 16 473 3 yhjP Uncharacterized protein YhjP Bacillus subtilis (strain 168)
P55669 1.43e-07 57 23 17 399 3 NGR_a01440 Probable peptide ABC transporter periplasmic-binding protein y4tO Sinorhizobium fredii (strain NBRC 101917 / NGR234)
A0A0H2ZGW2 6.7e-07 55 22 18 486 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HVS4 8.04e-07 55 22 18 486 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q46863 1.12e-05 51 20 14 426 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
P71370 8.74e-05 48 22 24 523 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZI72 0.000159 48 23 20 431 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
P45285 0.000172 48 21 18 490 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_06690
Feature type CDS
Gene ddpA
Product ABC-type transport system, periplasmic component
Location 176814 - 178409 (strand: -1)
Length 1596 (nucleotides) / 531 (amino acids)

Contig

Accession contig_6
Length 178871 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1166
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02035 peptide/nickel transport system substrate-binding protein Quorum sensing -

Protein Sequence

MTKKSVFARTLVSLLLGTAISASALAAAENTGHTLRLAIGAEPTEGFDPMLGWSHGSYLLLHSPLLKQKADLSWHSYLLDSYDHNADGKEWTLKLKKDLKFSDGSPLTAKDVAFTYNNAAAGGGKIDMGNFAKAEEIDPLTVKITLSEPQSTFINVLGSLGIVSADKYDARQYAQKPVGAGPYRLVAFQPGQQLIVEANPYYAGPKNDFNKLVFVFLDEDAAFAAAQSRQLEVVRIPPVIAATAGDVKGMKLVERASVENRGIVFPIPKAGEKDAQGYPIGNDITADVAIRKAINYAIDRKLLSEQVMEGYAVPAFTGVHGLPWNNPESAFKDGDAEKAKQILEEAGWKLNKDGLREKDGKVAKLTLWYTSGDTTRRDLAQAIRAFLKPIGIELDLQSGSWETVERHMHANPTLFGWGSLDPMELVHHYSSKAAGVEFYNPGYYKNPQVDAILEKAMSAPDQEAAIPVWQQVDWNGKTGTGIKGDAAWAWLLNVQHTYVVSDCVDLGKGAPEIHGSWSLLNSVDDWAWTCK

Flanking regions ( +/- flanking 50bp)

GATTAACTCAAAATTAAACATTGTAAATTTTAGTTAGGTAAGGACAAGTAATGACTAAAAAGTCAGTTTTTGCAAGAACACTCGTCTCTCTGCTGTTAGGTACAGCAATCAGTGCTTCAGCGCTGGCTGCGGCAGAAAATACCGGTCATACATTGCGGCTGGCCATCGGCGCAGAACCGACAGAAGGGTTTGACCCGATGCTCGGCTGGAGCCACGGCAGTTATCTGTTACTGCACAGCCCGCTGCTCAAACAAAAGGCCGATCTTTCCTGGCACAGCTACCTGCTGGACAGCTACGACCACAATGCCGACGGCAAAGAGTGGACACTGAAGCTGAAAAAAGACCTGAAATTCTCTGACGGCTCCCCGCTGACCGCCAAAGATGTGGCGTTCACCTATAACAATGCGGCCGCCGGCGGCGGTAAAATCGATATGGGTAACTTTGCCAAAGCAGAGGAAATTGATCCGCTGACAGTGAAAATCACCCTGTCCGAACCTCAGAGTACGTTTATCAACGTGCTCGGCTCTCTCGGCATTGTATCCGCCGATAAATATGATGCCAGACAGTATGCCCAAAAACCGGTGGGTGCCGGGCCGTACCGCCTGGTAGCTTTCCAGCCGGGCCAGCAGCTGATTGTTGAGGCTAACCCGTACTACGCCGGGCCGAAAAATGACTTTAACAAGCTGGTGTTTGTCTTCCTGGATGAGGATGCCGCCTTTGCTGCCGCACAGAGCCGCCAGCTTGAGGTTGTCCGCATTCCGCCGGTGATTGCCGCAACTGCCGGTGATGTCAAAGGGATGAAACTGGTGGAACGCGCCAGCGTGGAAAACCGCGGTATTGTTTTCCCTATCCCGAAAGCCGGTGAAAAAGATGCACAGGGTTACCCGATCGGTAACGATATCACCGCTGATGTTGCCATCCGTAAAGCCATCAACTATGCGATTGACCGCAAATTGCTGTCTGAGCAGGTGATGGAAGGGTACGCCGTACCGGCCTTTACCGGTGTTCACGGCCTGCCGTGGAACAACCCGGAATCCGCCTTTAAAGATGGTGATGCGGAAAAAGCCAAACAGATCCTGGAAGAAGCAGGCTGGAAACTCAATAAAGACGGGCTGCGTGAGAAAGACGGCAAAGTCGCCAAACTGACGCTGTGGTACACCAGCGGGGATACCACCCGCCGTGACCTGGCACAGGCTATCCGCGCCTTCCTGAAACCAATCGGCATTGAACTGGATTTACAGTCCGGCAGCTGGGAAACCGTTGAACGCCATATGCACGCCAACCCGACACTGTTCGGCTGGGGCAGCCTGGATCCGATGGAGTTAGTTCATCACTACAGCAGCAAAGCGGCGGGCGTGGAATTCTACAACCCGGGTTATTACAAAAATCCGCAGGTGGATGCCATCCTTGAGAAAGCCATGAGTGCGCCGGATCAGGAAGCCGCTATTCCTGTCTGGCAGCAGGTGGACTGGAACGGCAAAACCGGTACCGGGATTAAAGGGGATGCCGCCTGGGCGTGGCTGCTGAATGTGCAGCATACCTATGTGGTGAGTGATTGTGTTGATTTGGGCAAGGGCGCACCGGAGATCCACGGGTCATGGTCACTGCTCAACAGCGTGGATGACTGGGCCTGGACCTGTAAATAATGCGCAGTGCCCTGTTCCTTTTCGTGCGGTTTGTTTGTCTGCTGACGGTC