PF00392


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00392, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 66 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00392
Description Bacterial regulatory proteins, gntR family

Occurence in the database

PF00392 is associated with 66 different proteins (see tab "Protein list" and "Profile")
The 66 proteins are classified into 10 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_600 FBDBKF_01815 50742 52163 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S1
1 group_2543 FBDBKF_02480 190945 192282 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S1
2 group_150 FBDBKF_04245 37329 38093 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S1
3 group_2652 FBDBKF_04470 87561 88982 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S1
4 group_989 FBDBKF_05475 105660 106373 -1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S1
5 group_2733 FBDBKF_07525 18616 19326 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S1
6 group_3289 FBDBKF_09170 63354 64091 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S1
7 group_2840 FBDBKF_10540 67043 67816 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S1
8 group_2053 FBDBKF_15380 1078 1764 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S1
9 group_3105 FBDBKF_19595 3509 4996 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S1
10 group_600 EHELCC_02285 438562 439983 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S2
11 group_2543 EHELCC_02950 578765 580102 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S2
12 group_150 EHELCC_05535 96786 97550 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S2
13 group_2652 EHELCC_05760 147018 148439 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S2
14 group_3289 EHELCC_10240 82013 82750 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S2
15 group_989 EHELCC_12115 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S2
16 group_2840 EHELCC_14875 67033 67806 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S2
17 group_2053 EHELCC_15740 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S2
18 group_3105 EHELCC_16885 38736 40223 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S2
19 group_2733 EHELCC_17195 46266 46976 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S2
20 group_2543 NLDBIP_00510 100034 101371 -1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S4
21 group_600 NLDBIP_01175 240153 241574 -1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S4
22 group_150 NLDBIP_05855 137851 138615 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S4
23 group_2652 NLDBIP_06080 188083 189504 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S4
24 group_3289 NLDBIP_10585 60284 61021 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S4
25 group_989 NLDBIP_12455 75076 75789 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S4
26 group_2733 NLDBIP_13800 13685 14395 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S4
27 group_2840 NLDBIP_14705 67033 67806 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S4
28 group_2053 NLDBIP_16630 79599 80285 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S4
29 group_3105 NLDBIP_17565 15543 17030 -1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S4
30 group_600 LHKJJB_00860 151111 152532 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S3
31 group_2543 LHKJJB_01525 291314 292651 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S3
32 group_150 LHKJJB_02735 115375 116139 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S3
33 group_2652 LHKJJB_02960 165607 167028 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S3
34 group_2733 LHKJJB_09050 145354 146064 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S3
35 group_3289 LHKJJB_10770 130507 131244 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S3
36 group_989 LHKJJB_12315 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S3
37 group_2840 LHKJJB_14640 73932 74693 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S3
38 group_2053 LHKJJB_16175 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S3
39 group_3105 LHKJJB_17485 15543 17030 -1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S3
40 group_600 HKOGLL_00900 156622 158043 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S5
41 group_2543 HKOGLL_01565 296825 298162 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S5
42 group_150 HKOGLL_06210 37239 38003 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S5
43 group_2652 HKOGLL_06435 87471 88892 1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S5
44 group_2733 HKOGLL_08600 145354 146064 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S5
45 group_989 HKOGLL_10930 75121 75834 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella morganii S5
46 group_2840 HKOGLL_13260 73932 74693 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S5
47 group_3289 HKOGLL_13830 63808 64545 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S5
48 group_2053 HKOGLL_15945 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S5
49 group_3105 HKOGLL_17300 15543 17030 -1 aRO8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain Morganella morganii S5
50 group_989 F4V73_RS03825 809307 810026 1 fadR fatty acid metabolism transcriptional regulator FadR Morganella psychrotolerans
51 group_600 F4V73_RS04140 874990 876411 1 PLP-dependent aminotransferase family protein Morganella psychrotolerans
52 group_2543 F4V73_RS04855 1032182 1033519 1 PLP-dependent aminotransferase family protein Morganella psychrotolerans
53 group_150 F4V73_RS08690 1798377 1799141 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella psychrotolerans
54 group_2652 F4V73_RS08920 1851311 1852753 1 PLP-dependent aminotransferase family protein Morganella psychrotolerans
55 group_3105 F4V73_RS10395 190909 192396 1 PLP-dependent aminotransferase family protein Morganella psychrotolerans
56 group_2733 F4V73_RS13590 350976 351686 1 UTRA domain-containing protein Morganella psychrotolerans
57 group_2840 F4V73_RS14250 69385 70149 -1 FCD domain-containing protein Morganella psychrotolerans
58 group_2053 F4V73_RS17765 195389 196075 -1 FadR/GntR family transcriptional regulator Morganella psychrotolerans
59 group_150 PMI_RS01990 469587 470237 -1 GntR family transcriptional regulator Proteus mirabilis HI4320
60 group_150 PMI_RS05125 1119084 1119797 -1 FadR/GntR family transcriptional regulator Proteus mirabilis HI4320
61 group_600 PMI_RS06935 1516834 1518249 -1 PLP-dependent aminotransferase family protein Proteus mirabilis HI4320
62 group_989 PMI_RS07320 1604205 1604924 -1 fadR fatty acid metabolism transcriptional regulator FadR Proteus mirabilis HI4320
63 group_150 PMI_RS10090 2205495 2206265 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Proteus mirabilis HI4320
64 group_2053 PMI_RS15090 3349328 3350014 1 FadR/GntR family transcriptional regulator Proteus mirabilis HI4320
65 group_150 PMI_RS17685 3882343 3883002 -1 GntR family transcriptional regulator Proteus mirabilis HI4320