Homologs in group_150

Help

9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04245 FBDBKF_04245 22.3 Morganella morganii S1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
EHELCC_05535 EHELCC_05535 22.3 Morganella morganii S2 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
NLDBIP_05855 NLDBIP_05855 22.3 Morganella morganii S4 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
LHKJJB_02735 LHKJJB_02735 22.3 Morganella morganii S3 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
HKOGLL_06210 HKOGLL_06210 22.3 Morganella morganii S5 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
F4V73_RS08690 F4V73_RS08690 23.3 Morganella psychrotolerans pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
PMI_RS01990 PMI_RS01990 27.2 Proteus mirabilis HI4320 - GntR family transcriptional regulator
PMI_RS05125 PMI_RS05125 27.8 Proteus mirabilis HI4320 - FadR/GntR family transcriptional regulator
PMI_RS10090 PMI_RS10090 24.1 Proteus mirabilis HI4320 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR

Distribution of the homologs in the orthogroup group_150

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_150

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P54988 3.86e-13 68 30 5 175 4 ntaR Nta operon transcriptional regulator Aminobacter aminovorans
P0ACM4 3.92e-11 63 28 1 138 4 ydfH Uncharacterized HTH-type transcriptional regulator YdfH Shigella flexneri
P0ACM3 3.92e-11 63 28 1 138 4 ydfH Uncharacterized HTH-type transcriptional regulator YdfH Escherichia coli O157:H7
P0ACM2 3.92e-11 63 28 1 138 1 rspR HTH-type transcriptional repressor RspR Escherichia coli (strain K12)
Q8FHD1 4.08e-11 63 28 1 134 4 ydfH Uncharacterized HTH-type transcriptional regulator YdfH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P32425 9.5e-09 57 26 4 188 4 None Uncharacterized HTH-type transcriptional regulator in unstable DNA locus Streptomyces ambofaciens
O05494 8.12e-06 48 30 0 70 4 ydhC Uncharacterized HTH-type transcriptional regulator YdhC Bacillus subtilis (strain 168)
P44487 2.04e-05 47 25 9 216 3 uxuR Uxu operon regulator Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P12380 3.25e-05 47 34 2 97 4 hutC Histidine utilization repressor Klebsiella aerogenes
O34817 4.61e-05 46 41 1 75 1 nagR HTH-type transcriptional repressor NagR Bacillus subtilis (strain 168)
P37335 5.57e-05 46 30 0 81 4 bphR Uncharacterized HTH-type transcriptional regulator BphR Paraburkholderia xenovorans (strain LB400)
P31460 0.000109 45 24 6 173 1 dgoR Galactonate operon transcriptional repressor Escherichia coli (strain K12)
Q8GAL4 0.00015 45 22 3 198 2 gntR Probable D-xylose utilization operon transcriptional repressor Paenarthrobacter nicotinovorans
P39161 0.000153 45 24 6 225 4 uxuR Uxu operon transcriptional regulator Escherichia coli (strain K12)
Q9HU78 0.000341 43 31 2 93 3 hutC Histidine utilization repressor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0ACL9 0.00037 43 36 2 75 1 pdhR Pyruvate dehydrogenase complex repressor Escherichia coli (strain K12)
P0ACM0 0.00037 43 36 2 75 3 pdhR Pyruvate dehydrogenase complex repressor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACM1 0.00037 43 36 2 75 3 pdhR Pyruvate dehydrogenase complex repressor Escherichia coli O157:H7
P0CL10 0.000377 43 36 2 75 3 pdhR Pyruvate dehydrogenase complex repressor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1W823 0.000377 43 36 2 75 3 pdhR Pyruvate dehydrogenase complex repressor Salmonella typhimurium (strain SL1344)
P0A2S3 0.000377 43 36 2 75 3 pdhR Pyruvate dehydrogenase complex repressor Salmonella typhi
P76114 0.000435 43 25 2 140 1 mcbR HTH-type transcriptional regulator McbR Escherichia coli (strain K12)
P13669 0.00047 43 37 1 64 1 mngR Mannosyl-D-glycerate transport/metabolism system repressor MngR Escherichia coli (strain K12)
P0ACL8 0.000501 43 37 1 67 3 lldR Putative L-lactate dehydrogenase operon regulatory protein Shigella flexneri
P0ACL7 0.000501 43 37 1 67 2 lldR Putative L-lactate dehydrogenase operon regulatory protein Escherichia coli (strain K12)
P10585 0.000543 43 23 2 133 4 gntR Gluconate operon transcriptional repressor Bacillus subtilis (strain 168)
P70790 0.000548 42 31 0 77 4 None Uncharacterized HTH-type transcriptional regulator in the TAR-I ttuE-ttuC' intergenic region Agrobacterium vitis
P22773 0.000687 43 34 1 81 4 hutC Histidine utilization repressor Pseudomonas putida

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17685
Feature type CDS
Gene -
Product GntR family transcriptional regulator
Location 3882343 - 3883002 (strand: -1)
Length 660 (nucleotides) / 219 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_150
Orthogroup size 10
N. genomes 7

Actions

Genomic region

Domains

PF00392 Bacterial regulatory proteins, gntR family
PF07729 FCD domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1802 Transcription (K) K DNA-binding transcriptional regulator, GntR family

Protein Sequence

MQKKTSPQILCQKIADIIRQKITIGELPPGERLSEATLSEQLEISRNTLREVFRILTQEGLLTYKPNRGVFVSVPDMASIMDIYRVRRLIECDALRHAYPMHPAISRMQDNVNQAKMFQQQKDWNSVGTCNMHFHTAIVELSDSPRLFKQYQLILAELRLAFGLLNDPQLLHAPYIEKNEHILTLLMNGKAQEAAIEMESYLEISERTVLAAFSRHNIC

Flanking regions ( +/- flanking 50bp)

ATAGCTGACTGTTAGAATAGAGGCTTCTATTACGTTTATAGCAGAAGATAATGCAGAAAAAAACATCACCACAGATCCTTTGCCAAAAAATCGCTGATATTATTCGCCAAAAAATTACTATCGGCGAATTACCTCCAGGAGAGAGGCTTTCAGAAGCTACTTTAAGCGAGCAGCTTGAAATATCTCGTAATACATTAAGAGAAGTATTTCGTATATTAACCCAAGAAGGCCTATTAACCTATAAACCTAATCGTGGTGTGTTTGTTTCTGTACCAGATATGGCATCAATTATGGATATTTATCGCGTAAGAAGGCTGATTGAATGTGATGCTTTACGACATGCCTATCCAATGCACCCAGCCATTTCCCGCATGCAAGATAACGTTAATCAAGCAAAAATGTTTCAACAACAAAAAGATTGGAATAGCGTTGGAACCTGTAATATGCATTTTCATACCGCTATCGTCGAGCTTTCTGATAGCCCTAGGTTATTTAAACAATATCAACTTATTTTAGCAGAATTACGATTAGCCTTTGGTTTACTCAATGATCCTCAATTATTACATGCTCCTTATATTGAGAAGAATGAGCATATTTTAACGCTATTGATGAATGGGAAAGCGCAAGAAGCGGCAATCGAAATGGAAAGTTATTTAGAAATATCCGAGCGAACCGTATTAGCCGCTTTTTCTCGCCACAACATCTGTTAATATCAACGAAAAATAGATAGTAAAATTGCCCTCATCTAGAGCATGCTTAA