COG0564


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0564, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 35 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0564 is associated with 35 different proteins (see tab "Protein list" and "Profile")
The 35 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1022 FBDBKF_05725 149530 150291 1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S1
1 group_1068 FBDBKF_06050 35394 36167 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S1
2 group_1096 FBDBKF_06235 79906 80556 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S1
3 group_1967 FBDBKF_14755 46374 47333 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S1
4 group_2050 FBDBKF_15360 79980 80957 1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S1
5 group_1068 EHELCC_09095 35966 36739 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S2
6 group_1096 EHELCC_09280 80478 81128 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S2
7 group_2050 EHELCC_10885 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S2
8 group_1022 EHELCC_11865 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S2
9 group_1967 EHELCC_15560 76450 77409 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S2
10 group_1068 NLDBIP_09475 35966 36739 -1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S4
11 group_1096 NLDBIP_09660 80478 81128 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S4
12 group_2050 NLDBIP_11230 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S4
13 group_1022 NLDBIP_12205 31158 31919 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S4
14 group_1967 NLDBIP_16090 76450 77409 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S4
15 group_1096 LHKJJB_08095 136110 136760 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S3
16 group_1068 LHKJJB_08280 180499 181272 1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S3
17 group_2050 LHKJJB_11090 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S3
18 group_1022 LHKJJB_12065 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S3
19 group_1967 LHKJJB_15750 39277 40236 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S3
20 group_1096 HKOGLL_07645 136110 136760 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella morganii S5
21 group_1068 HKOGLL_07830 180499 181272 1 truC tRNA pseudouridine(65) synthase TruC Morganella morganii S5
22 group_2050 HKOGLL_09700 3949 4926 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella morganii S5
23 group_1022 HKOGLL_10680 31203 31964 -1 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific Morganella morganii S5
24 group_1967 HKOGLL_14870 38489 39448 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella morganii S5
25 group_1967 F4V73_RS07550 1575183 1576142 -1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Morganella psychrotolerans
26 group_2050 F4V73_RS12095 4016 4993 -1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Morganella psychrotolerans
27 group_1022 F4V73_RS12565 106807 107505 1 RluA family pseudouridine synthase Morganella psychrotolerans
28 group_1096 F4V73_RS15680 133657 134307 -1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Morganella psychrotolerans
29 group_1068 F4V73_RS15855 177694 178419 1 truC tRNA pseudouridine(65) synthase TruC Morganella psychrotolerans
30 group_2050 PMI_RS01910 447955 448932 1 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD Proteus mirabilis HI4320
31 group_1967 PMI_RS04185 945239 946192 1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC Proteus mirabilis HI4320
32 group_1068 PMI_RS11325 2493792 2494571 -1 truC tRNA pseudouridine(65) synthase TruC Proteus mirabilis HI4320
33 group_1096 PMI_RS11520 2540379 2541032 1 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA Proteus mirabilis HI4320
34 group_1022 PMI_RS14760 3274566 3275264 1 RluA family pseudouridine synthase Proteus mirabilis HI4320