PF00196


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00196, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 50 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00196
Description Bacterial regulatory proteins, luxR family

Occurence in the database

PF00196 is associated with 50 different proteins (see tab "Protein list" and "Profile")
The 50 proteins are classified into 8 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_433 FBDBKF_00380 50491 51183 1 rcsB response regulator transcription factor RcsB Morganella morganii S1
1 group_496 FBDBKF_00905 164902 165513 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S1
2 group_1286 FBDBKF_07815 88686 89315 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S1
3 group_1297 FBDBKF_07940 119782 120411 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
4 group_1475 FBDBKF_09505 143207 143908 -1 narL two-component system response regulator NarL Morganella morganii S1
5 group_1823 FBDBKF_13510 80729 81358 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
6 group_2094 FBDBKF_15760 3794 4453 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
7 group_496 EHELCC_00640 143355 143966 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S2
8 group_433 EHELCC_01165 257685 258377 -1 rcsB response regulator transcription factor RcsB Morganella morganii S2
9 group_1823 EHELCC_08585 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
10 group_1475 EHELCC_09905 2196 2897 1 narL two-component system response regulator NarL Morganella morganii S2
11 group_1286 EHELCC_13645 62880 63509 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S2
12 group_1297 EHELCC_13770 93976 94605 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
13 group_2094 EHELCC_17675 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
14 group_433 NLDBIP_02295 421759 422451 1 rcsB response regulator transcription factor RcsB Morganella morganii S4
15 group_496 NLDBIP_02820 536170 536781 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S4
16 group_1823 NLDBIP_08910 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
17 group_1286 NLDBIP_14090 83755 84384 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S4
18 group_1297 NLDBIP_14215 114851 115480 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
19 group_1475 NLDBIP_19225 2194 2895 1 narL two-component system response regulator NarL Morganella morganii S4
20 group_2094 NLDBIP_19345 13668 14327 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
21 group_433 LHKJJB_03810 29000 29692 1 rcsB response regulator transcription factor RcsB Morganella morganii S3
22 group_496 LHKJJB_04335 143411 144022 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S3
23 group_1823 LHKJJB_05355 62697 63326 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
24 group_1297 LHKJJB_08635 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
25 group_1286 LHKJJB_08760 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S3
26 group_2094 LHKJJB_18115 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
27 group_1475 LHKJJB_19145 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S3
28 group_496 HKOGLL_02710 143560 144171 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S5
29 group_433 HKOGLL_03235 257890 258582 -1 rcsB response regulator transcription factor RcsB Morganella morganii S5
30 group_1823 HKOGLL_05560 178424 179053 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
31 group_1297 HKOGLL_08185 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
32 group_1286 HKOGLL_08310 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S5
33 group_1475 HKOGLL_18925 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S5
34 group_2094 HKOGLL_18965 3672 4331 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
35 group_1823 F4V73_RS03250 692620 693249 -1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
36 group_433 F4V73_RS06360 1322715 1323365 1 rcsB response regulator transcription factor RcsB Morganella psychrotolerans
37 group_496 F4V73_RS06900 1430643 1431254 1 ttrR tetrathionate respiration response regulator TtrR Morganella psychrotolerans
38 group_2094 F4V73_RS07930 1652553 1653263 -1 response regulator Morganella psychrotolerans
39 group_1475 F4V73_RS10465 210742 211455 1 narL two-component system response regulator NarL Morganella psychrotolerans
40 group_1297 F4V73_RS13045 223014 223643 1 response regulator transcription factor Morganella psychrotolerans
41 group_1286 F4V73_RS13230 268459 269088 1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
42 group_1297 PMI_RS00930 230251 230883 -1 response regulator transcription factor Proteus mirabilis HI4320
43 group_2094 PMI_RS07405 1616486 1617049 -1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
44 group_1823 PMI_RS07560 1652173 1652796 1 response regulator Proteus mirabilis HI4320
45 group_4477 PMI_RS08220 1794321 1794923 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
46 group_496 PMI_RS08245 1802039 1802641 1 ttrR tetrathionate respiration response regulator TtrR Proteus mirabilis HI4320
47 group_433 PMI_RS08490 1847715 1848371 1 rcsB response regulator transcription factor RcsB Proteus mirabilis HI4320
48 group_1286 PMI_RS10800 2379289 2379924 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
49 group_1475 PMI_RS17750 3895035 3895697 -1 narL two-component system response regulator NarL Proteus mirabilis HI4320