PF00196

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00196
Protein list: lists the 50 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00196
Description Bacterial regulatory proteins, luxR family

Occurence in the database

PF00196 is associated with 50 different proteins
The 50 proteins are classified into 7 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_509 FBDBKF_00380 50491 51183 1 rcsB response regulator transcription factor RcsB Morganella morganii S1
1 group_572 FBDBKF_00905 164902 165513 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S1
2 group_1343 FBDBKF_07815 88686 89315 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S1
3 group_1354 FBDBKF_07940 119782 120411 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
4 group_291 FBDBKF_09505 143207 143908 -1 narL two-component system response regulator NarL Morganella morganii S1
5 group_1861 FBDBKF_13510 80729 81358 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
6 group_2132 FBDBKF_15760 3794 4453 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
7 group_572 EHELCC_00640 143355 143966 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S2
8 group_509 EHELCC_01165 257685 258377 -1 rcsB response regulator transcription factor RcsB Morganella morganii S2
9 group_1861 EHELCC_08585 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
10 group_291 EHELCC_09905 2196 2897 1 narL two-component system response regulator NarL Morganella morganii S2
11 group_1343 EHELCC_13645 62880 63509 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S2
12 group_1354 EHELCC_13770 93976 94605 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
13 group_2132 EHELCC_17675 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
14 group_509 NLDBIP_02295 421759 422451 1 rcsB response regulator transcription factor RcsB Morganella morganii S4
15 group_572 NLDBIP_02820 536170 536781 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S4
16 group_1861 NLDBIP_08910 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
17 group_1343 NLDBIP_14090 83755 84384 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S4
18 group_1354 NLDBIP_14215 114851 115480 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
19 group_291 NLDBIP_19225 2194 2895 1 narL two-component system response regulator NarL Morganella morganii S4
20 group_2132 NLDBIP_19345 13668 14327 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
21 group_509 LHKJJB_03810 29000 29692 1 rcsB response regulator transcription factor RcsB Morganella morganii S3
22 group_572 LHKJJB_04335 143411 144022 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S3
23 group_1861 LHKJJB_05355 62697 63326 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
24 group_1354 LHKJJB_08635 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
25 group_1343 LHKJJB_08760 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S3
26 group_2132 LHKJJB_18115 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
27 group_291 LHKJJB_19145 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S3
28 group_572 HKOGLL_02710 143560 144171 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S5
29 group_509 HKOGLL_03235 257890 258582 -1 rcsB response regulator transcription factor RcsB Morganella morganii S5
30 group_1861 HKOGLL_05560 178424 179053 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
31 group_1354 HKOGLL_08185 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
32 group_1343 HKOGLL_08310 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S5
33 group_291 HKOGLL_18925 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S5
34 group_2132 HKOGLL_18965 3672 4331 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
35 group_1861 F4V73_RS03250 692620 693249 -1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
36 group_509 F4V73_RS06360 1322715 1323365 1 rcsB response regulator transcription factor RcsB Morganella psychrotolerans
37 group_572 F4V73_RS06900 1430643 1431254 1 ttrR tetrathionate respiration response regulator TtrR Morganella psychrotolerans
38 group_2132 F4V73_RS07930 1652553 1653263 -1 response regulator Morganella psychrotolerans
39 group_291 F4V73_RS10465 210742 211455 1 narL two-component system response regulator NarL Morganella psychrotolerans
40 group_1354 F4V73_RS13045 223014 223643 1 response regulator transcription factor Morganella psychrotolerans
41 group_1343 F4V73_RS13230 268459 269088 1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
42 group_1354 PMI_RS00930 230251 230883 -1 response regulator transcription factor Proteus mirabilis HI4320
43 group_2132 PMI_RS07405 1616486 1617049 -1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
44 group_1861 PMI_RS07560 1652173 1652796 1 response regulator Proteus mirabilis HI4320
45 group_291 PMI_RS08220 1794321 1794923 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
46 group_572 PMI_RS08245 1802039 1802641 1 ttrR tetrathionate respiration response regulator TtrR Proteus mirabilis HI4320
47 group_509 PMI_RS08490 1847715 1848371 1 rcsB response regulator transcription factor RcsB Proteus mirabilis HI4320
48 group_1343 PMI_RS10800 2379289 2379924 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
49 group_291 PMI_RS17750 3895035 3895697 -1 narL two-component system response regulator NarL Proteus mirabilis HI4320