Homologs in group_291

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09505 FBDBKF_09505 27.9 Morganella morganii S1 narL two-component system response regulator NarL
EHELCC_09905 EHELCC_09905 27.9 Morganella morganii S2 narL two-component system response regulator NarL
NLDBIP_19225 NLDBIP_19225 27.9 Morganella morganii S4 narL two-component system response regulator NarL
LHKJJB_19145 LHKJJB_19145 27.9 Morganella morganii S3 narL two-component system response regulator NarL
HKOGLL_18925 HKOGLL_18925 27.9 Morganella morganii S5 narL two-component system response regulator NarL
F4V73_RS10465 F4V73_RS10465 27.2 Morganella psychrotolerans narL two-component system response regulator NarL
PMI_RS17750 PMI_RS17750 30.1 Proteus mirabilis HI4320 narL two-component system response regulator NarL

Distribution of the homologs in the orthogroup group_291

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_291

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O69280 8.04e-12 64 27 6 197 3 ecnR Transcriptional regulatory protein EntR Citrobacter freundii
P0DMD0 1.82e-10 61 22 4 193 1 rcsA Transcriptional regulatory protein RcsA Escherichia coli
P0DMC9 4.67e-09 57 22 4 193 1 rcsA Transcriptional regulatory protein RcsA Escherichia coli (strain K12)
P69406 4.67e-09 57 22 4 193 3 rcsA Transcriptional regulatory protein RcsA Escherichia coli O157:H7
P27488 5.2e-08 54 22 4 207 3 rcsA Transcriptional regulatory protein RcsA Pantoea stewartii subsp. stewartii
P05338 3.44e-07 52 20 3 204 3 rcsA Transcriptional regulatory protein RcsA Klebsiella aerogenes
P54698 5.05e-07 51 21 4 193 3 rcsA Transcriptional regulatory protein RcsA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56083 5.1e-07 51 21 4 193 3 rcsA Transcriptional regulatory protein RcsA Salmonella typhi
P20098 6.3e-05 45 21 4 195 3 rcsA Transcriptional regulatory protein RcsA Erwinia amylovora

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08220
Feature type CDS
Gene -
Product LuxR C-terminal-related transcriptional regulator
Location 1794321 - 1794923 (strand: 1)
Length 603 (nucleotides) / 200 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_291
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00196 Bacterial regulatory proteins, luxR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2197 Signal transduction mechanisms (T)
Transcription (K)		 TK DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains

Protein Sequence

MKILIIDECYFTRNGIRHFFLKKNVRHEIIDMSSIEEANHYINNSMPDIIFIDLTKYCREVAHCQHLQYFFSLTQECRLYLYIDANYPDKDRPIALTNNCFILAKRVLPWVLERTSTLTSRCQVFFPTYKHSLCSIFSIQEQKIINYWMGELPNYQIAKKLKISNSTVYSHKRHITEKINVKNRIELFFIYNILKYIYEK

Flanking regions ( +/- flanking 50bp)

GTTATCTTTATTTTAATAACTTGAAAATAGATATCACAAGGAAGTTATTAGTGAAAATATTAATTATTGATGAGTGTTACTTTACTCGTAATGGTATTCGGCATTTCTTCTTAAAAAAAAATGTAAGGCATGAAATTATTGATATGTCTTCTATTGAAGAAGCTAATCATTATATTAATAACTCTATGCCTGATATTATTTTTATTGATCTCACTAAATATTGTCGTGAAGTAGCACATTGTCAGCACTTGCAATATTTCTTTTCACTGACTCAAGAGTGTCGTTTATACCTCTATATTGATGCCAACTATCCAGACAAAGATAGACCTATCGCCTTGACAAATAACTGTTTTATCCTTGCTAAACGAGTACTACCTTGGGTATTAGAGAGAACATCAACATTAACTTCTCGTTGCCAAGTTTTTTTCCCCACTTATAAACATTCTCTTTGCTCAATATTTAGCATACAAGAACAAAAAATCATAAATTACTGGATGGGAGAGTTGCCTAACTATCAAATTGCCAAAAAATTAAAAATTAGCAATAGCACCGTTTATTCGCATAAAAGACATATTACTGAAAAAATAAATGTAAAAAATAGAATTGAACTCTTCTTTATATATAATATATTAAAATATATCTATGAGAAATAAATACAAACTTATCGTTTAATGATTGATATATTTTATGGAATGAAATTATG