Homologs in group_1286

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07815 FBDBKF_07815 94.7 Morganella morganii S1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
EHELCC_13645 EHELCC_13645 94.7 Morganella morganii S2 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
NLDBIP_14090 NLDBIP_14090 94.7 Morganella morganii S4 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
LHKJJB_08760 LHKJJB_08760 94.7 Morganella morganii S3 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
HKOGLL_08310 HKOGLL_08310 94.7 Morganella morganii S5 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
PMI_RS10800 PMI_RS10800 55.0 Proteus mirabilis HI4320 - LuxR C-terminal-related transcriptional regulator

Distribution of the homologs in the orthogroup group_1286

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1286

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26487 1.24e-24 99 28 2 193 3 fixJ Transcriptional regulatory protein FixJ Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P10958 1.42e-23 96 29 1 196 1 fixJ Transcriptional regulatory protein FixJ Rhizobium meliloti (strain 1021)
P23221 3e-22 92 28 1 182 3 fixJ Transcriptional regulatory protein FixJ Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q3LWR6 5.61e-21 90 28 1 202 3 todT Response regulator protein TodT Pseudomonas putida
I7CA98 5.61e-21 90 28 1 202 1 todT Response regulator protein TodT Pseudomonas putida (strain DOT-T1E)
A5W4E2 5.61e-21 90 28 1 202 1 todT Response regulator protein TodT Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q8KR08 1.25e-20 89 28 1 203 1 tmoT Response regulator protein TmoT Pseudomonas mendocina
O87940 2.76e-20 88 27 1 181 1 tdiR Transcriptional regulatory protein TdiR Thauera aromatica
P37740 6.71e-18 81 24 4 199 3 dctR C4-dicarboxylate transport transcriptional regulatory protein DctR Rhodobacter capsulatus
P15940 5.47e-17 79 28 1 173 3 nodW Nodulation protein W Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q7CQM8 1.88e-12 66 20 2 198 1 ttrR Tetrathionate response regulatory protein TtrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O34723 5.03e-09 57 28 4 172 1 desR Transcriptional regulatory protein DesR Bacillus subtilis (strain 168)
P27667 6.53e-09 57 30 2 120 3 uhpA Transcriptional regulatory protein UhpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AGA9 2.36e-08 55 30 2 120 3 uhpA Transcriptional regulatory protein UhpA Shigella flexneri
P0AGA6 2.36e-08 55 30 2 120 1 uhpA Transcriptional regulatory protein UhpA Escherichia coli (strain K12)
P0AGA7 2.36e-08 55 30 2 120 3 uhpA Transcriptional regulatory protein UhpA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGA8 2.36e-08 55 30 2 120 3 uhpA Transcriptional regulatory protein UhpA Escherichia coli O157:H7
P0AEL8 3.23e-08 55 25 3 165 3 fimZ Fimbriae Z protein Escherichia coli (strain K12)
P0AEL9 3.23e-08 55 25 3 165 3 fimZ Fimbriae Z protein Escherichia coli O157:H7
Q1XDE4 3.41e-08 55 26 5 182 3 ycf29 Probable transcriptional regulator ycf29 Neopyropia yezoensis
Q6GE42 5.68e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MRSA252)
Q2YZ42 5.68e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A029 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MW2)
A8Z580 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain USA300 / TCH1516)
Q6G6T0 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MSSA476)
Q7A3U5 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain N315)
Q99RN8 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QJN1 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Newman)
Q5HDG5 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain COL)
A5IVH2 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain JH9)
Q2FVM7 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FEA6 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain USA300)
A6U4C0 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain JH1)
A7X623 5.73e-08 54 46 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Mu3 / ATCC 700698)
P0A4H2 1.67e-07 53 24 1 157 1 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0A4H4 1.67e-07 53 24 1 157 3 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P0A4H3 1.67e-07 53 24 1 157 3 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q5HLK6 1.7e-07 53 44 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q4L8Q6 1.72e-07 53 44 1 68 3 nreC Oxygen regulatory protein NreC Staphylococcus haemolyticus (strain JCSC1435)
Q8CN75 1.75e-07 53 44 0 58 3 nreC Oxygen regulatory protein NreC Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q7WZY4 2.91e-07 52 26 7 205 1 nreC Oxygen regulatory protein NreC Staphylococcus carnosus (strain TM300)
O07528 1.36e-06 50 31 2 121 3 yhcZ Uncharacterized transcriptional regulatory protein YhcZ Bacillus subtilis (strain 168)
Q46791 1.52e-06 49 43 0 55 1 ygeK Uncharacterized response regulatory protein YgeK Escherichia coli (strain K12)
Q1M7A0 1.52e-06 50 22 2 135 3 mctR Transcriptional regulatory protein MctR Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
P58664 2.51e-06 49 43 0 55 4 ygeK Uncharacterized response regulatory protein YgeK Escherichia coli O157:H7
P51343 2.99e-06 49 26 3 141 3 ycf29 Probable transcriptional regulator ycf29 Porphyra purpurea
P24908 3.6e-06 49 30 4 157 1 PA0034 Putative transcriptional regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P66797 6.33e-06 48 23 3 152 3 uvrY Response regulator UvrY Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P66798 6.33e-06 48 23 3 152 3 uvrY Response regulator UvrY Escherichia coli O157:H7
P0AED6 6.51e-06 48 23 3 152 3 uvrY Response regulator UvrY Shigella flexneri
P0AED5 6.51e-06 48 23 3 152 1 uvrY Response regulator UvrY Escherichia coli (strain K12)
P59969 3.23e-05 47 36 0 57 4 BQ2027_MB0914C Putative HTH-type transcriptional regulator Mb0914c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMG0 3.23e-05 47 36 0 57 4 MT0914 Putative HTH-type transcriptional regulator MT0914 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WMG1 3.51e-05 47 36 0 57 1 Rv0890c Putative HTH-type transcriptional regulator Rv0890c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P26319 5.21e-05 45 23 3 160 3 fimZ Fimbriae Z protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7CQM5 7.25e-05 45 23 2 151 1 ssrB Response regulator SsrB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P31802 0.000106 45 26 3 143 3 narP Nitrate/nitrite response regulator protein NarP Escherichia coli (strain K12)
P56644 0.000185 44 28 1 108 3 sgaR Probable transcriptional regulatory protein SgaR Hyphomicrobium methylovorum
Q51373 0.000226 44 25 2 153 3 gacA Response regulator GacA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P14375 0.000544 43 27 1 88 1 zraR Transcriptional regulatory protein ZraR Escherichia coli (strain K12)
Q8Z333 0.00058 43 24 1 98 3 zraR Transcriptional regulatory protein ZraR Salmonella typhi
P25852 0.000602 43 24 1 98 1 zraR Transcriptional regulatory protein ZraR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q4L7J5 0.000717 42 24 3 133 3 vraR Response regulator protein VraR Staphylococcus haemolyticus (strain JCSC1435)
Q8X613 0.000802 43 29 0 64 3 zraR Transcriptional regulatory protein ZraR Escherichia coli O157:H7
P37640 0.000832 42 35 1 57 1 yhjB Putative HTH-type transcriptional regulator YhjB Escherichia coli (strain K12)
P11470 0.000858 40 40 0 54 1 gerE Spore germination protein GerE Bacillus subtilis (strain 168)
P0ACZ7 0.000879 42 25 2 148 1 evgA DNA-binding transcriptional activator EvgA Shigella flexneri
P0ACZ4 0.000879 42 25 2 148 1 evgA DNA-binding transcriptional activator EvgA Escherichia coli (strain K12)
P0ACZ5 0.000879 42 25 2 148 3 evgA DNA-binding transcriptional activator EvgA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACZ6 0.000879 42 25 2 148 3 evgA DNA-binding transcriptional activator EvgA Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13230
Feature type CDS
Gene -
Product LuxR C-terminal-related transcriptional regulator
Location 268459 - 269088 (strand: 1)
Length 630 (nucleotides) / 209 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1286
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00072 Response regulator receiver domain
PF00196 Bacterial regulatory proteins, luxR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4566 Signal transduction mechanisms (T)
Transcription (K)		 TK DNA-binding response regulator, FixJ family, consists of REC and HTH domains

Protein Sequence

MDAVIHLINCADLPSNNINFMLDDMNCEVKSYSSEQAFLKYYVNTPKEHARECIILEVGESSAEAFYLIDELKRLKSIIPTIVITAYPSFETCRRAFKAGVLEFFKKPINSELLVNAIHDAFGQYEKSLSKYHTYQRLKDKFSKLSAREKEVMDMILDGNTSKEAAQKLSLSPRTVEVHRSNMYTKLRIKSLPQLVQEYDFYKNYSDSI

Flanking regions ( +/- flanking 50bp)

CAGCAAATACCTTTTTATTTCAGTATCCTATTTTAATAAAGGAGTTATTTATGGATGCCGTTATTCATTTGATCAACTGTGCGGACCTGCCAAGCAACAATATCAACTTCATGCTCGACGATATGAACTGTGAAGTAAAATCCTACTCATCTGAGCAGGCTTTTCTTAAATACTATGTCAATACACCAAAAGAGCACGCCCGCGAATGTATTATTCTGGAAGTCGGTGAATCTTCAGCAGAAGCATTTTATCTGATTGATGAACTTAAACGCCTGAAAAGTATTATTCCGACGATTGTTATTACCGCATATCCCTCTTTTGAAACCTGCCGCCGTGCCTTCAAAGCCGGTGTACTGGAGTTCTTTAAAAAACCAATTAATTCTGAATTGTTAGTTAATGCAATTCATGATGCATTTGGTCAATATGAAAAAAGCCTTAGTAAATACCATACTTATCAACGGCTAAAAGATAAATTCAGTAAGTTATCCGCACGCGAAAAAGAAGTTATGGATATGATCCTGGATGGAAATACCAGTAAAGAAGCAGCACAGAAACTGTCTCTGTCTCCGCGTACCGTTGAAGTTCATCGTTCTAATATGTATACCAAATTACGTATTAAATCATTACCTCAGCTTGTGCAGGAATACGATTTCTACAAAAATTATTCCGATTCTATCTGATTCAGATTGATATTATTATTTATATTCCGTTATTTATAAGAAAATAACAT