Orthogroup:group_1343


Homologs in group_1343

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07815 FBDBKF_07815 Morganella morganii S1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
EHELCC_13645 EHELCC_13645 Morganella morganii S2 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
NLDBIP_14090 NLDBIP_14090 Morganella morganii S4 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
LHKJJB_08760 LHKJJB_08760 Morganella morganii S3 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
HKOGLL_08310 HKOGLL_08310 Morganella morganii S5 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains
F4V73_RS13230 F4V73_RS13230 Morganella psychrotolerans - LuxR C-terminal-related transcriptional regulator
PMI_RS10800 PMI_RS10800 Proteus mirabilis HI4320 - LuxR C-terminal-related transcriptional regulator

Distribution of group_1343 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1343 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1343

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1343.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fixJ 5
2 - 2

Product

# Product Occurence
1 DNA-binding response regulator, FixJ family, consists of REC and HTH domains 5
2 LuxR C-terminal-related transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4566 7 TK Signal transduction mechanisms (T)
Transcription (K)		 DNA-binding response regulator, FixJ family, consists of REC and HTH domains

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00072 7 Response regulator receiver domain
PF00196 7 Bacterial regulatory proteins, luxR family

Annotations of the 95 SwissProt hits

Annotation Number of occurrences
C4-dicarboxylate transport transcriptional regulatory protein DctR 1
DNA-binding transcriptional activator EvgA 4
DNA-binding transcriptional regulator NtrC 8
Fimbriae Z protein 3
Methanol utilization control regulatory protein MoxX 1
Nitrate/nitrite response regulator protein NarP 1
Nodulation protein W 1
Oxygen regulatory protein NreC 18
Probable transcriptional regulator ycf29 4
Probable transcriptional regulatory protein SgaR 1
Putative HTH-type transcriptional regulator MT0914 1
Putative HTH-type transcriptional regulator Mb0914c 1
Putative HTH-type transcriptional regulator Rv0890c 1
Putative HTH-type transcriptional regulator YhjB 1
Putative response regulator NtrX-like 5
Putative transcriptional regulator 1
Regulatory protein AtoC 1
Response regulator GacA 4
Response regulator SsrB 1
Response regulator UvrY 4
Response regulator protein TmoT 1
Response regulator protein TodT 3
Response regulator protein VraR 2
Spore germination protein GerE 1
Tetrathionate response regulatory protein TtrR 1
Transcriptional regulatory protein DegU 1
Transcriptional regulatory protein DesR 1
Transcriptional regulatory protein FixJ 3
Transcriptional regulatory protein GlrR 1
Transcriptional regulatory protein MctR 1
Transcriptional regulatory protein QseF 1
Transcriptional regulatory protein TdiR 1
Transcriptional regulatory protein UhpA 5
Transcriptional regulatory protein ZraR 5
Uncharacterized response regulatory protein YgeK 2
Uncharacterized transcriptional regulatory protein YhcZ 1
Virulence factors putative positive transcription regulator BvgA 3

Protein length

Min length 209
Max length 211
Mean length (sd) 209.3 (0.8)
Median length 209.0

Protein length distribution